Gene JJD26997_1368 details

Gene Information

• Locus tag: JJD26997_1368
• ID: 5390267
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. doylei 269.97
• Kingdom: Bacteria
• Replicon accession: NC_009707
• Strand: +
• Start bp: 1208404
• End bp: 1210338
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640862336
• Product: RNB-like protein
• Protein accession: YP_001398410
• Protein GI: 153951181
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02063] ribonuclease R

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.346055
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAGAAT TTTTAAACAG TCTTAGTTAT GGCATCAGTT CTCACGAAGT AAGCAATGAA 
TTTAAACAAA TTTTAAGAGA GCTTTTAGCC AATCATATCA TCAAAGAACA CAAAAACAAA 
TACTATCTTA ACAATGGCTT TGCCTTTGGA ATACTCGATA TTTCAAGTAA AGGCACAGGT 
TTTTTACAAT GCTTTGATAA AAGTTTTAAA AAAGATCTTT TAATAGAAAA CAAAAATCTA 
AAAGGCGCAA ACTATAAAGA TATAGTCGCA GTAAAGCTTT TACCTTTAAA GAAAAAACGC 
CCCAGTGCAA AGGTGATTTT GGTTTTAAAA AAAGCCAATG AAACTTCTTT AGTGATCACC 
AAAAGGTATG GCGAAGCCGT GCTTGGAATG AATATCAAAA CAGGATTAAG CACTGCCTTA 
AAAGCTTCTC AAAAATCCTT AAAAGCACTG CCTTTAGGGA CAATTTTAAA AATAGAAAAT 
GAAAATAACA ACATCATAGA AGTTTTAGGG CATATCGATG ATGAAAGCGT AGATGAAAAA 
ATCTCTTTAG CCCTTTTCAA TAAAAACAAC GAATTTAGCG ACGCTTGCAT TAAAGAAGCT 
CTAGCAAACG GAGATAGCGT TGATGCGAGT ATGTATGAAA ACCGCATGGA TTTAAGAGCT 
TTGCCTTTTT GCACCATAGA TCCCATACAT GCAAAAGATT TTGATGATGC GATTTATTTT 
GACACCCAAA AACGAGAAAT TTATGTAGCT ATTGCTGATG TTAGCGAATA TGTTTATGCT 
TATAGCGCTA TAGATAAAGA AGCAAGAAAT CGTGGATTTT CTATTTATTT TCCACATATT 
GCTATACCTA TGCTACCTCG TCCTTTAAGT GAAAATATCT GTTCTTTAAA ACCTCATTTA 
GATCGCCTAG TGTATTGTTT TAAAATCACA CTCGATCATG ACAATAAAGT CATCAAAGAA 
GAACTTTTTG AAGGTATTAT CAACTCAAAA CGCCGTTTTA ACTACGATGA AGTCGATGAA 
ATTTTAGTGC AAAAGCCTGA TTTAAAAGAG CTTTCATGGA TTTATGAACT TTTTGAAATC 
ACAAAAAATT TACGCAAAAT GCGTCTTAAA AATGCCTTTG AATTTCGCAC CGAAGAATTA 
AAAATGAATT TAGATGAAAA TTTAAGTCTA AAAAGCACAG TTTTTGAAAA AGACACGCCT 
TCACATAATT TGATCGAAGA TTGTATGCTT TTAGCCAATA AAGCCGCAGC AAAACTCATA 
GATATAGGTA TCTTTAGAAA TCACTTAAGC GCTGATGCAA GAAAAATCGA TAAACTTTTA 
AATGAATTAC GCGAACTAGG CATCGATATG AATTTCAAAG CCAATCTTCC TGAACTCATA 
CGCGACATAC AAGCTTTAGC CGATGAGTTA AATTTAAGAG CAGAAGTAGA TAAACTCATC 
ATCAAAGCAC AAAAAAAAGC AGAATATTCC AGTATAAATG CGGGGCATTT TGGCTTAGGT 
TTTGATAAAT ACTCACATTT TACAAGCCCT ATAAGAAGGT ATTCTGATCT TATTTTACAC 
AGACTTTTAA AAGCCAAACA AAAAAACGAT GAAAAACTTT TTAACTATCT GCTTTTAAAC 
ATAGAAAGCA CTTGCGAGAG TCTTAGCACG CTTGAAAGAG AAGCGGATAA GGTTGCTTTT 
GATTTTATGG ATAGAAAATT TGCTAGATGG GCAGCTAAAA ATACAGGCAA AAAATTTAAA 
GCTTTAGTTG TGCAAAATGA TGGAGTTTGC ATAGCTAAAC TAGATGATGA AATCAAAGGA 
GCGGATATCA TCCTTTATGA TACGCGTGTG AATTTGCTAG AAAGTGTTGA AGTACAAATC 
ATGGAAGCGG ATATAATTAT GGCAAAAATT CATGCCAAAA TCACCCAAAA ACTTACAAAG 
GAAGAAAATG TATAA 

 

Protein sequence

MKEFLNSLSY GISSHEVSNE FKQILRELLA NHIIKEHKNK YYLNNGFAFG ILDISSKGTG 
FLQCFDKSFK KDLLIENKNL KGANYKDIVA VKLLPLKKKR PSAKVILVLK KANETSLVIT 
KRYGEAVLGM NIKTGLSTAL KASQKSLKAL PLGTILKIEN ENNNIIEVLG HIDDESVDEK 
ISLALFNKNN EFSDACIKEA LANGDSVDAS MYENRMDLRA LPFCTIDPIH AKDFDDAIYF 
DTQKREIYVA IADVSEYVYA YSAIDKEARN RGFSIYFPHI AIPMLPRPLS ENICSLKPHL 
DRLVYCFKIT LDHDNKVIKE ELFEGIINSK RRFNYDEVDE ILVQKPDLKE LSWIYELFEI 
TKNLRKMRLK NAFEFRTEEL KMNLDENLSL KSTVFEKDTP SHNLIEDCML LANKAAAKLI 
DIGIFRNHLS ADARKIDKLL NELRELGIDM NFKANLPELI RDIQALADEL NLRAEVDKLI 
IKAQKKAEYS SINAGHFGLG FDKYSHFTSP IRRYSDLILH RLLKAKQKND EKLFNYLLLN 
IESTCESLST LEREADKVAF DFMDRKFARW AAKNTGKKFK ALVVQNDGVC IAKLDDEIKG 
ADIILYDTRV NLLESVEVQI MEADIIMAKI HAKITQKLTK EENV