| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | JJD26997_1154 |
|---|
| Symbol | |
|---|
| ID | 5389294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. doylei 269.97 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009707 |
|---|
| Strand | - |
|---|
| Start bp | 1007073 |
|---|
| End bp | 1009970 |
|---|
| Gene Length | 2898 bp |
|---|
| Protein Length | 965 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640862147 |
|---|
| Product | autotransporter beta-domain-containing protein |
|---|
| Protein accession | YP_001398235 |
|---|
| Protein GI | 153951888 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00168321 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATCAATC AAGGAACCAT TAAGGGTAAG ATAGGGATAG AAAATAATAA TGGCTTTACA
GGAACCATCA CTGTCAAGAC CTTTGAAAAT AAAAAAAACA TCGATGGACA TATCTATATG
GGAATTTGGG GTGGGAATGG AGGAACTATC AGCATAGAAA CCTTTAACAA TGAAGGAACC
ATTACTACTT CTAATAATGA TGGAGTCATT TATAATGATG GAGTCATTTA TTTTGAAGGA
ACTACCCATA TAAAAACCTT TAAAAACACG GGAACCATAG AATCCAAGAA TGGTAAAAAT
TCAATCACTG TAAAAGCAAA AAATAGTCAG ACTCCTACTC TTGAAAACTT TATCAATGAT
GGAACCATTA AGGGCAAGAT AGGGATAGAA AATAATAATG GTGGCTTTAA CGGAACCATC
ACTGTGGGGA CCTTTGAAAA TAAAAAAACC ATCGATGGAC ATATCTATAT GGGAATTTGG
GGTGGGAATG GAACTATCAA CATAGAGAAT TTTACCAATG AAGGAACCAT TACTTCTAAT
AATAATGATG GAGGAGTTTA TTTTGAAAAA GGCAATATCC ATATAGAAAC CTTTAGAAAC
ACGGGAACCA TCAAAGGAGA TGATGACGGA AAGAATGGTC AGGGAGTTTA TTTTAAAGAT
ATCCGTGTAG TAAAAACCTT TGAAAATACA GGATTCATCT CAGGAAGTGG TGATAATTCT
CAAGCTGGGG GTTTAATGAC AGGGGGTGGT GTAAGTATGA GTGGTGGCAC TATAGACAAT
TTCATCAATA AAGGAACCAT AAAAAGCACA GGAAAAACCA ATGATCCAGC AGGTGTAAAG
TTAAATTGGG CTACAGTAAA GACCTTTGAA AACACAAACA CAGGCTTGAT TTCGGGTATC
AATGGCTTCC TAACCACTAA GGGCACTATA GAGACTTTTA AAAACAGCGG AACCATAGAA
TCAACAAGCA CAGGTAATGG GGAAGCAGCT ATTAAAATTC AAACGGTTAA TGGCAATTTT
TCTACCATTA CTCACTTTAT CAATGAAGGA ACTATTAAAT CAGACTCTAA TGGTGTATTG
ATAGAATCAG GCGATAAAAT AGGAACTCTT ACTAACCAAG GAACCATAGA AACAAAATTA
AATGGCATAA GTTTTTTTGA CTCAGGACCT GAGGGTAGCC CTGGTGAGGC TGACTTAGGT
AAAATCGTTC TTGAATCAGG CAGTAGCATT AAGGCTGGAA AGAATGGCAT CAACATAGAC
CATGAAACTA CTGCTAGGAG TATTAGAGTC GATAGCATTG AAGTTAAAGC AGGTGCCAGT
GTAAGTGGGA ATGAAGCGGG AATTTATTTA GGAAAGGGTA AAGAAATCAC TGCCCCCATC
ACCGTCTCAG GAACGGTCAG TGGGGGGAAT GCAGGTATAG TCAATGAAGG TAGAATGGCT
AAGGGTATTA CTCATGATGG CGAAGCTGAA TTGGTTATCT CTAACCAAGG TTTAGTAGAT
AAAGGTGACG ATGGTAATAC AGTAACCAAT GATGGTAGCG GTAGTGTGAG AATCAAAGAG
TGGCTCGTTA CTACTGATGA AAGTACACAT AGATTAAGAA CGGTGCATGT AGGTGGAAAG
AATAAAGCCA ATGTAAGAGT AACAAACATC ACTGTAGATC AAAGCGGTTT GGATCTTAAT
CAATTAAACG ATATAACAAA CATCATCTCA GGTGTGAGTC CAAACAATAT TGCCGATAGT
GTAAAAACCA ATGGAGGTGG AGAAATATCT TTAAGCTTTG ATCCCTTATC AGGAAGACTT
TCTACAGATG TTCAACTCAA TGCTTCCATA GCAGGAGCAA GCTTTAGATC TTCACTCGCC
ACAGCTTCAA AAAGAGCCAC CTTTATAGAT AATGTTATGG CTAATGCTAT GCAAAGCTTT
AGCTTAGATT CTTCAGGCAA AGCTCAAAAA ATAGCCTTGT CTGAAAAGGG TAATTTATAT
GCGGATGCAA GTGATTATAT CAAGAATGAT TTAACTCGTG ATTATATCAA GAATGATTAT
ATCAAAAGTG ATTTGACTCA AGCAAATTAT GGTTTGAATA AAGAGCATGC TTTATTCATC
CTTCCTTATC TTTCTTCACA GAGTGTTGAA CTTTCTTTAA ATGAAGAAAG TAAAGGACAC
ACTAAAGGAA CCATCATAGG TTATTCTACT TTAAAAGACA GTGGAATATA CGGTGTGTAT
GCAGGTTATG AAGATACAAA GATGGATTCA ACTTATTTTG ATGTGAATAA TATAAGCTAT
TATACAGGTT TAAAATACTT TAATACCTTA TTCACTACAG CTAAGGGTCA AGAAGTTTAT
ATCAAAGCCC AGGCTCAAGC TGCCCTAATT AAAAATGATT TCACTAAAAG AATAGGAAAG
AATGAAGCTA AAGCTAAAGC TCATTCTTAT ACTTATGGAA TCCATACCGC TTGGGGTATG
AATTTCATTG CGGATAAAAA CATATTCTCA CCTGAAGCCG GTTTTGCTTA TGAAGGAAGT
TATACGGAAG CTTTTTCCAT GCAAGATACT AGAGGTCAGG CAACCGTTAG GGGTGGAGAA
AGAACCTATG CAAACCACTT GAATCTTTTC TCTACTAAAA CAAGCTTTAC TTGGTTTAGA
GATTGGTTGC CTAATCTAAA AACTTCAGTA GAACTTGGAG CTAAGTTTAA TGTCAATCCT
AAAGTAAAAG CTAGGGCTAG ATTTGGAAAT ATGAAAGTGA ATGATGAGTT TCATTTACCC
CGAGTACGCA AATTCGCAAG TACTTCTTTA ATTGTTCCTG TTAATGAAGC TTTCTATTTT
AGTTTAAACT ATAATGGAAT GTTTGATGAA AAAGGCAACA CCCATACAGG ATTTGCTCAG
TTTAATTATC TTTGGTGA
|
|---|
| Protein sequence | MINQGTIKGK IGIENNNGFT GTITVKTFEN KKNIDGHIYM GIWGGNGGTI SIETFNNEGT
ITTSNNDGVI YNDGVIYFEG TTHIKTFKNT GTIESKNGKN SITVKAKNSQ TPTLENFIND
GTIKGKIGIE NNNGGFNGTI TVGTFENKKT IDGHIYMGIW GGNGTINIEN FTNEGTITSN
NNDGGVYFEK GNIHIETFRN TGTIKGDDDG KNGQGVYFKD IRVVKTFENT GFISGSGDNS
QAGGLMTGGG VSMSGGTIDN FINKGTIKST GKTNDPAGVK LNWATVKTFE NTNTGLISGI
NGFLTTKGTI ETFKNSGTIE STSTGNGEAA IKIQTVNGNF STITHFINEG TIKSDSNGVL
IESGDKIGTL TNQGTIETKL NGISFFDSGP EGSPGEADLG KIVLESGSSI KAGKNGINID
HETTARSIRV DSIEVKAGAS VSGNEAGIYL GKGKEITAPI TVSGTVSGGN AGIVNEGRMA
KGITHDGEAE LVISNQGLVD KGDDGNTVTN DGSGSVRIKE WLVTTDESTH RLRTVHVGGK
NKANVRVTNI TVDQSGLDLN QLNDITNIIS GVSPNNIADS VKTNGGGEIS LSFDPLSGRL
STDVQLNASI AGASFRSSLA TASKRATFID NVMANAMQSF SLDSSGKAQK IALSEKGNLY
ADASDYIKND LTRDYIKNDY IKSDLTQANY GLNKEHALFI LPYLSSQSVE LSLNEESKGH
TKGTIIGYST LKDSGIYGVY AGYEDTKMDS TYFDVNNISY YTGLKYFNTL FTTAKGQEVY
IKAQAQAALI KNDFTKRIGK NEAKAKAHSY TYGIHTAWGM NFIADKNIFS PEAGFAYEGS
YTEAFSMQDT RGQATVRGGE RTYANHLNLF STKTSFTWFR DWLPNLKTSV ELGAKFNVNP
KVKARARFGN MKVNDEFHLP RVRKFASTSL IVPVNEAFYF SLNYNGMFDE KGNTHTGFAQ
FNYLW
|
|---|
| |