| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | JJD26997_1050 |
|---|
| Symbol | |
|---|
| ID | 5390313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. doylei 269.97 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009707 |
|---|
| Strand | - |
|---|
| Start bp | 923415 |
|---|
| End bp | 924731 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640862055 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001398145 |
|---|
| Protein GI | 153951906 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0807602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA AACAACTCTC CTTAACAAGA CTTAGTTTTC CTATATTTTG GGACTTGCTT
TCTAAGTATT TAACCATGAT TATCAATACC GCTATGGTGT CGCATTATTC TAATTTTCTT
GTGGGTGCTA TGGGAGCTGG AAATCAAATT TTAGATCTTT TTATCATTAT TTTTTCATTT
TTAAGCGTGG GTTGTAGCGT GGTGATTGCA CAAGCAATTG GTGCAAAAGA TCATGTTTTA
GCAAGAAAAG TGATCCATCA AAGCTTGTTC TTAAATGCAC TTTTAGGCTT TGTTTGCGGT
GTGTTTATTT TGTGGCATGG GGAGTATTTG CTTTATCTTT TAAAAATCCC ACAAGAACTG
CTTAAGGATA GCGAAATTTA CTTAAACATG CTTGCAATTT GTTTGTTTTT TGATGCCATA
GGTATTGTTT TAGCTGCTAT TGTAAGGGTT TATAATATGG CTTATTGGGT GATGCTTATA
GGCTTTTTGA TGGATATAGT GGTGATTTGT GGAAATTATT ATGTTTTGCA TCATACAAAA
TCAGAACTTT TTGGAGTAGG GCTTAGCAAT ATTTTTGCGC GTATTGTTGC TATAGTGGCT
TTACTTGTGA TACTTTTTTA TAAACTTAAA ATTCATCTTA AAATCAAAGA AATGATAAAA
CTTGAAAAAG AAGTTTTAAA AAAGGTTTTA AATATAGGTG GATTTTCAGC AGGGGAAAAT
CTTTTATGGA TAGTCCAATA CACTATAGCC TTTGCTTTTG TAGCAAGCTT AGGTGAGGCG
AGTTTGAGTG TGCAAACGAT TTATTTTCAA ATTTCAATGC TTATCATGCT TATAGGACAA
GCTACGAGCA TAGCTAATGA AATCATAGTG GGTAAATTAG TCGGTGCTAG ATATGAAAAT
ATAGCTTATA AACACGCTTG GCGTGCTTTG TATTTTAGCG TGGTAGCGAG TGCTTTAGTG
GCACTTTTGA ATTATCTTTG TCAAGATTTT ACTATGCAAA TTTTAGGGCT TGAAGAAGAG
TTAAAAAATT TAATGATACC TTTATTTGCC CTTTCAATCT TTCTTGAAAT TTCACGCACT
TTTAACATAG TCATGGTCAA TTCTTTGCGT GCAAGTGGGG ATGCTAAGTT TCCATTTTTT
AGCGGACTTG TTTTTATGAT GGGAGTATCT TTACCTGTGG GTTATGTGCT TTGTTTTCAT
TTTAATCTTG GAATTTTAGG GGTTTGGATA GGATTTTGTG CGGATGAGTT TTTGCGTGGA
ATGGTAAATT CATACAGATG GAAAAGTAAA AAATGGCAAG GCAAAGCTCT AATTTAA
|
|---|
| Protein sequence | MAKKQLSLTR LSFPIFWDLL SKYLTMIINT AMVSHYSNFL VGAMGAGNQI LDLFIIIFSF
LSVGCSVVIA QAIGAKDHVL ARKVIHQSLF LNALLGFVCG VFILWHGEYL LYLLKIPQEL
LKDSEIYLNM LAICLFFDAI GIVLAAIVRV YNMAYWVMLI GFLMDIVVIC GNYYVLHHTK
SELFGVGLSN IFARIVAIVA LLVILFYKLK IHLKIKEMIK LEKEVLKKVL NIGGFSAGEN
LLWIVQYTIA FAFVASLGEA SLSVQTIYFQ ISMLIMLIGQ ATSIANEIIV GKLVGARYEN
IAYKHAWRAL YFSVVASALV ALLNYLCQDF TMQILGLEEE LKNLMIPLFA LSIFLEISRT
FNIVMVNSLR ASGDAKFPFF SGLVFMMGVS LPVGYVLCFH FNLGILGVWI GFCADEFLRG
MVNSYRWKSK KWQGKALI
|
|---|
| |