Gene JJD26997_0788 details

Gene Information

• Locus tag: JJD26997_0788
• Symbol: rpoD
• ID: 5389627
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. doylei 269.97
• Kingdom: Bacteria
• Replicon accession: NC_009707
• Strand: -
• Start bp: 712936
• End bp: 714804
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 640861827
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001397920
• Protein GI: 153952229
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.101684
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCCA AAACTCAAAA AGCTGAATTA GAAGAATTAT TTCAAGAAAA TGCAAAAGAT 
TATATCACAT ACGAAAAATT GGTAAAATAT CTTACAAAAC AACCAAGCGC ATCAACCGCT 
AAAAAAGTAC AAGCATTAAT GAAAAAACAC AAAGTACAAC TTTTTTCAGC AGCTGAAATC 
GCACAAATGA AAAACATAGA AGATGCAAAA AGACTTCAAG AAGAAAAACA AAAACTCCAA 
GATACAAGCC TTGAGAATGA ATTTGATTTA GCCAATGAAA ACGATTTATT AGAATGGAGC 
AGATCAGACT CTCCTGTTCG TATGTATTTA AGAGAAATGG GACAAATTGC TTTATTAAAC 
AAAGATGAAG AAATTGAAAT TTCCAAAAAA ATAGAACTTG GTGAAGATAT TATTATTGAT 
GCTTTTTGTT CTGTACCTTA TTTGATAGAT TTTATTTTAG ATTATAAAGA ACCTTTAATA 
AACAGAGAAA GAAGAGTAAA AGAACTATTT AAAAGCTTTG ACGATGAAGA AAAAAGCGAT 
GATAAACTTG ATGAACTTGA TATAGATGAA GATGAAAAAA ACGAAGCAGA ATTAGAAGTA 
GATGAAGAAA ATACTAAAAA AAATAGCAAA AAAGAAGATG AAAGAACTTT AAAAGTTATA 
GAAAAATTTA AAGCCCTAGA AAAAGCTAAA AAAGATTGGC TAAAAACATC CAAAGATAAA 
GAAAGCGGGA ATGAGCTTTT AGATAAATTA AGCATTGCAT TCAAAAAAAA TATTTTAAAA 
GAAAAATTAA TGGATCTAGG CCCTACTTCA AAACTTATTA GTGAAATCGT GAAATCAATG 
GAAACTGCAC TAAAAAGTGA TGAAGAATTT GACAAAGAAC TTAAGCGTTT AGAATACCGC 
TTACCTATGT TTTCTGATGA ACTTAAAAAA CGCCATGCAG ATATTTTGAA AGATATTACA 
AAATTGAGCA AAGAAGAAAT CACAGAGCGA GCTTTAGAAA CAACCATGGT AAGCACTTAT 
ATGGAAATCA AAAAATTATT TCAAACTAAA GAAGCCGGTG AAAAAAGCTT TGATCTTGAA 
AAATCACGTT TAAAAGAAAT TTTAGAGCAA ATTAAACGTG GTAAAAAAAT CTCTGATGAA 
GCAAAAGGAA GAATGGCAAA ATCAAACTTG CGTCTTGTTG TAAGCATAGC TAAACGCTAC 
ACAAATCGTG GTCTACCTTT CTTAGATCTT ATCCAAGAAG GAAATATAGG TTTGATGAAA 
GCTGTGGATA AATTTGAATA CAAAAGGGGT TATAAATTTT CCACTTATGC AACTTGGTGG 
ATCAGACAAG CTATTTCAAG GGCTATAGCT GATCAAGCAA GAACCATAAG AATTCCAATC 
CACATGATAG AAACCATCAA TCAAATCAAC AAAATTATCC GCGAACATCT ACAAAAGGAT 
GGAAAAGAAC CTAATGTCAG TGTTATAGCT AAAGAAGTAG GTTTAAGCAT AGATAAAGTT 
AAACAAGTTA TTAAAATCAC AAAAGAACCA ATTTCTCTTG AAGCCCCAAT AGGAAATGAA 
GATGATGGTA AATTTGGAGA TTTTGTTGAA GATAGAAATT CGCTTTCTCC AATAGATCAT 
ATCTTAAAAG ATGATTTAAA AGAACAAATT GATGAAGTTT TGGATCAATT AAACGATAGG 
GAAAAAGCGG TAATTCGAAT GCGCTTTGGC TTAATGGATG ATGAAAGTGA TAGAACTTTA 
GAAGAAATTG GAAAAGAACT TAATGTCACT CGAGAAAGAG TGAGACAAAT AGAAAGCTCA 
GCTATAAAAA AACTCAAACA CCCTAAAGTA GGAAGAAAAC TAAAAAATTA TATAGAAGGT 
TGGAAGTAA 

 

Protein sequence

MNAKTQKAEL EELFQENAKD YITYEKLVKY LTKQPSASTA KKVQALMKKH KVQLFSAAEI 
AQMKNIEDAK RLQEEKQKLQ DTSLENEFDL ANENDLLEWS RSDSPVRMYL REMGQIALLN 
KDEEIEISKK IELGEDIIID AFCSVPYLID FILDYKEPLI NRERRVKELF KSFDDEEKSD 
DKLDELDIDE DEKNEAELEV DEENTKKNSK KEDERTLKVI EKFKALEKAK KDWLKTSKDK 
ESGNELLDKL SIAFKKNILK EKLMDLGPTS KLISEIVKSM ETALKSDEEF DKELKRLEYR 
LPMFSDELKK RHADILKDIT KLSKEEITER ALETTMVSTY MEIKKLFQTK EAGEKSFDLE 
KSRLKEILEQ IKRGKKISDE AKGRMAKSNL RLVVSIAKRY TNRGLPFLDL IQEGNIGLMK 
AVDKFEYKRG YKFSTYATWW IRQAISRAIA DQARTIRIPI HMIETINQIN KIIREHLQKD 
GKEPNVSVIA KEVGLSIDKV KQVIKITKEP ISLEAPIGNE DDGKFGDFVE DRNSLSPIDH 
ILKDDLKEQI DEVLDQLNDR EKAVIRMRFG LMDDESDRTL EEIGKELNVT RERVRQIESS 
AIKKLKHPKV GRKLKNYIEG WK