Gene JJD26997_0272 details

Gene Information

• Locus tag: JJD26997_0272
• Symbol: selB
• ID: 5389524
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. doylei 269.97
• Kingdom: Bacteria
• Replicon accession: NC_009707
• Strand: -
• Start bp: 245856
• End bp: 247661
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 640861391
• Product: selenocysteine-specific elongation factor
• Protein accession: YP_001397491
• Protein GI: 153951384
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.350191
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCTG TTATTATAGG AACCGCAGGA CATATTGATC ATGGAAAAAC TTCACTCATT 
AAAGCTTTAA ATGGTTTTGA AGGCGATAGT TTAAAAGAAG AACAAGAAAG ACGAATCACC 
ATTAATTTAA GTTTTTCAAA TCTTAAATTA AAAGATAAAA ACATTTCTTT TATCGATGTT 
CCAGGACATA AAGATTTGGT TAAAACTATG GTAAGTGGAG CTTTTGGCTT TAGTGTTTGT 
TTATTTGTCG TAGATATTAA CGAAGGTTTA AAAGAACAAA GTTTAGAACA TTTAGAAATT 
TTAAAAATTC TTGATATTAA AAATATCATT TTAGTACTTA GCAAATGCGA TCTTTGTGAA 
AATATAGAGC AAAAAAGTGC CAAAATCTTA AAAGAATTAA AAAATTTAGA TTATCCCATT 
TTAAAAGTAT TTCATACCAG TATAAAAAAT AATCAAGGCA TAGAAGAATT AAAAAATTAT 
CTTTATACCA TAGAAAACAA AGAAAACGAT GGAGAACTGA TTTTTCATTA TTATATCGAT 
AGAGTTTTTT CTCTAAAAGG CATAGGAACT GTCGTTACAG GCAGTCTTAA TGAAGGAAGT 
ATCACTTTAA ATGAAAAAAT CATCTGTTTA GACACTCAAA AAGAACTCAT TGTTAAAAAT 
ATACAAAATC ACGATACTAA TTTAGAGCAA ATCAAAGCTT GCAACCGTGT AGCTTTAAGT 
TTAAATTGTG ATTATAAAGA GTTAAAAAAA GGTTATTTGC TGAGTAAAAA AGGTTATTTT 
AAAGCCTTTA AAGAATGTGA TGCTTTGGTT AGAGCAAAAA ATTTACAAAA TAGCAAAATG 
ATTTTTTGCG TGGGTTCAAG ACAAATAGAA TGCAAAATAA ATATATTAAA AAATCTAGAA 
AATGATGAAT TTTTTGTGCA TTTTAGTTTT GATAAAAATG TATTTTTAAG TTTTGATGAG 
ACTTTTATTT TATTGCAAAA CAATCGTGTT ATAGGTGGTG GTAAAGTTTT AAATCCTTTA 
AGCGAACCTT TAAAAAAAGA ACAAAAAAAT AAATTTCTAA TGTTTTTGAA AAATAAAGAT 
TTTAAAGCTG CTTTTTCTTT CTTAAAATAC ACACATAAAT ATGGCTTTGG TTTGCTTTCA 
AGCTATCAAA GATTTAAACT CTCTCATCAA AAAGCATTAG AATTAGCAAA AGAATTAAAT 
CAAGTATTTG TCGATGAAAA AAATCTCAAT GTATATCATT TACAAAGCCT AGAAGAAATT 
AAAAATTTCA TCAAATTCAT ACTTGAAAAA AATCCTTATG CCATGCTTTC GGCACATTCT 
TTAGCTTTAA GGATTACTTG GGCAAGTAAA AATTTTTGCG AACTTGGGCT TAAAGAGATG 
TCAAATTTAT TAGATTTTCA AAATGGAATT TATTTTAAAA AAGGCATAGA TTTTGAAAAA 
CTTCAAGAAA AAAACAATAA CCAATTATAT GAAATTTTAA AAAAACAAGG CATTAAACCC 
GAAGCTCCTT ATAATCTTTA TGATTTTTTA GAGCTTGATA GAAAAAGCGG GGATAATATA 
CTCAAAAAAC TTACCCAAAA AGGCTTGGTT GTAAGACTTT CACACAATCT TTTTATAGAA 
AAACAAGCTC TTGAAAAACT TATGCAAGAA TGTTTAAATT TATTAAAAAA TCAAAGTCTT 
GATGTGCAAA GTATGAAAGG ATATTTTAAT CTTTCAAGAA AATATGCTAT TACTTATTTA 
GAATACTTAG ACAAATTTCC TCAAGTAAGC AAAGAAGCTG AAAAAAGATT TTTAATAAAC 
ATTTAG 

 

Protein sequence

MKSVIIGTAG HIDHGKTSLI KALNGFEGDS LKEEQERRIT INLSFSNLKL KDKNISFIDV 
PGHKDLVKTM VSGAFGFSVC LFVVDINEGL KEQSLEHLEI LKILDIKNII LVLSKCDLCE 
NIEQKSAKIL KELKNLDYPI LKVFHTSIKN NQGIEELKNY LYTIENKEND GELIFHYYID 
RVFSLKGIGT VVTGSLNEGS ITLNEKIICL DTQKELIVKN IQNHDTNLEQ IKACNRVALS 
LNCDYKELKK GYLLSKKGYF KAFKECDALV RAKNLQNSKM IFCVGSRQIE CKINILKNLE 
NDEFFVHFSF DKNVFLSFDE TFILLQNNRV IGGGKVLNPL SEPLKKEQKN KFLMFLKNKD 
FKAAFSFLKY THKYGFGLLS SYQRFKLSHQ KALELAKELN QVFVDEKNLN VYHLQSLEEI 
KNFIKFILEK NPYAMLSAHS LALRITWASK NFCELGLKEM SNLLDFQNGI YFKKGIDFEK 
LQEKNNNQLY EILKKQGIKP EAPYNLYDFL ELDRKSGDNI LKKLTQKGLV VRLSHNLFIE 
KQALEKLMQE CLNLLKNQSL DVQSMKGYFN LSRKYAITYL EYLDKFPQVS KEAEKRFLIN 
I