| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_B0097 |
|---|
| Symbol | |
|---|
| ID | 5384183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009705 |
|---|
| Strand | - |
|---|
| Start bp | 107749 |
|---|
| End bp | 110271 |
|---|
| Gene Length | 2523 bp |
|---|
| Protein Length | 840 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640857206 |
|---|
| Product | type IV secretion system protein DotA-like protein |
|---|
| Protein accession | YP_001393395 |
|---|
| Protein GI | 153930723 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 0.551932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATGC CATTTTCACC GTGCGAGATT AGTGATGCTG CGGGGCAATG TTCTGATGTT
TCGGTAAATC ATTTAAAAGC TGTTTTTGGT GGTGTTATTG ATAGCTTGGT TCTTGGAACT
GACGCTAATA GTGTTGCTGC GAGTTCAAAT ATCCTCGCAA TGATGTTTAG CTTCTTTAAT
AGCGGGTTGT TGATTGTTGC CTCTATGCTT GTTTCTTATG TGGCCATTGT CGGTGTAACT
AATACTGCAA ACGATGGCGA AGCAATGGGC AAACAATGGT CTACAGTCTG GACAACTCTG
CGCTTAGTTT CTGGAGCCGC AGTTTTGTTA CCGACCGCAA GCGGATATTC TATTATCCAG
ATCATTGTAC TTATGATTAC ATTATGGGGG GTAGGATTTG CCAATGGCAT ATATAAAGCT
GGTGTTTCTA TTGGGATATT ATCCCCCAAT GCCATCGTTG GCGGGATAAA TAAGTCGGGA
GAGTATTACG GCTTACGTGA CTTCGCTAAC AATTATATCT CTGTGGCATA TTGTACCCAT
GTTGCAAATA GTATTTTTAA AGATGACACA ACAACCCCCA ATGTCGGGCA GGAACAAATA
AACAACATTA ATGGTGATAT CTCATTTGTT TATCGTGACA GTAACGCCGC GACAAATTTG
GGCGGGGGTT TACCCTTCTG TGGTTCCGTC ACTTTGACTC ACTATAAAGC CGTCAGTAAG
ACTTCTGCTT CGGATCAGAT CTTAGAGACC TTACATGAAA CTTTGCAGTC GGAAAAACAG
CAAGTCGCCC AACAGGTAAT GAACAGCATT AATGCTTGGG TTTCTACATG GCCAGTCACG
CTAAATGATG AGGGGTGGAG TCAGGTAGAT GCTAATAAAT TAAATGAAAT CGTTGTTCAA
GCTGAAAATC AAATTGCTAC TGATGCCAGT GGTCAAGGTG AAGCCGGGGG TAATCAGCTA
AGCAGAACAA TGGATATGTA TGTTGAGACG ATTATCAAGA ATGGTTGGGC TGAGTCTGCC
GCATGGTTCC AAAAGGTGGG AGCAATCAGG GGAGCGATTG CCGGTGTGAT GTCTGCTCAA
GTAGGCAAAG TTTCATCCCC CAGTTTTGTG GCCATGCCTG TCGATGCACG AACAACACAA
CTCGTTTCAT CGGTTAATAC TGTCGCTGAG CGAATTATAA AAAGTGCCGA GTCTAAAGAT
GCCTACAGTA ACAAAGTTGC CGTCCCTCAA GACATTGCTA ATGCCATTCC CAAAAGTGTT
GATTCTATCG ATATAGGATC GTTACAAAAG GATATGGATG ACAAGATGTC TTCTTTTACT
AATGGTGTGA TGCGCACGGT TATTGATACA GCGATTGATG CGGGGGGTAA CAGTAAATCC
TTAGCCTGTG GCACTGCTGG CCAGATGGGA GGATCAGTCA ATAGAATGAA ATGCATCGGT
GATTATCTGT CGGTTATGTC AGGCAGTGTT CAGACTTCAA TTTACATATT AGAAACTGCG
ACAACATCTG TCAGGATTTT ATCTGGTGCT GCCTCATCAG TAAAAATCAT GGGGATCGGG
GTTGATACGG ATAAAGTCAC AACGCCTCTA TGGGATTGGG TTATTGCTGT TCCCGTTGCG
CAGCTTACCT CAATATTGCG TTTTCTGACG CCGATGGCGA TGTATTTCTC AGTGTTACTG
CCTGCCATGC CAAATACCAT TTTTATGATT GTTTATGCAG GCTGGACTTT AGCTGTGTTG
CAAACCGTTA TCGCAGTCTG TTTATGGGCG ATGATGCATA TGACCCCTGA GCGGTCATTC
ATTGGCTCAC AAACTCAAGG TTACTTGCTG CTGTTGGCTC TTTTTGTTCG ACCAGCGCTT
GCGGTTATCG GTTTATTTGC GGCTATTCTT GTCATAGATC CAATGATCGA TTTTACTGCC
CAAGCATTTC TTGATACTCA AGCGGCTATT GGTACATCTA CGGGTGTTAT AGGCTCAATT
AGCCAATTCT TTAGTTTCGG GTGGTGGATG ATGTTGTTCA GTGTAGTGCT GTTGGCCATC
ATGTATATGT GTTTTTCGTT GCCACAAATC TTGCCTGATC ACGTTTTGAA ATGGATTAAC
ATTGGTATCA GTGATCTGGG GGAAACCAGC GCCAGTTCGA ATATGCGTGG AGGATTTGAG
CGTATTGGGC GTGATGATAT GTTGCCACCA AATAGTCCAC TGGCGCGCAT TGGTTCCCGT
GGCGGGTTAG AGAAGAGTGG GGGGGGAGGA ACTGACAGCA GGTTAGAAAA ACCGATCAGA
AGAGATGAAC ATATTGCTTC ATCTGAAGTT ATCTCACCGC ACGGTGCTAA TTCACCTGAT
ACAGGGGGTG GTGGTAAAGG AGGTGGTTCA AGTCATGCTG GGCGTGGTAG CTCATCATCA
TCTTCATCTG GCAATCCAGT TGATACTAGG AGCACTGACT CTAGAGGAAG TGCGAGCGGG
ATTAGTAAGG ATGAGACGTT TTACCAAAGT GAAACACCCG ATGCAGGATC AGGCGAATAT
TAA
|
|---|
| Protein sequence | MGMPFSPCEI SDAAGQCSDV SVNHLKAVFG GVIDSLVLGT DANSVAASSN ILAMMFSFFN
SGLLIVASML VSYVAIVGVT NTANDGEAMG KQWSTVWTTL RLVSGAAVLL PTASGYSIIQ
IIVLMITLWG VGFANGIYKA GVSIGILSPN AIVGGINKSG EYYGLRDFAN NYISVAYCTH
VANSIFKDDT TTPNVGQEQI NNINGDISFV YRDSNAATNL GGGLPFCGSV TLTHYKAVSK
TSASDQILET LHETLQSEKQ QVAQQVMNSI NAWVSTWPVT LNDEGWSQVD ANKLNEIVVQ
AENQIATDAS GQGEAGGNQL SRTMDMYVET IIKNGWAESA AWFQKVGAIR GAIAGVMSAQ
VGKVSSPSFV AMPVDARTTQ LVSSVNTVAE RIIKSAESKD AYSNKVAVPQ DIANAIPKSV
DSIDIGSLQK DMDDKMSSFT NGVMRTVIDT AIDAGGNSKS LACGTAGQMG GSVNRMKCIG
DYLSVMSGSV QTSIYILETA TTSVRILSGA ASSVKIMGIG VDTDKVTTPL WDWVIAVPVA
QLTSILRFLT PMAMYFSVLL PAMPNTIFMI VYAGWTLAVL QTVIAVCLWA MMHMTPERSF
IGSQTQGYLL LLALFVRPAL AVIGLFAAIL VIDPMIDFTA QAFLDTQAAI GTSTGVIGSI
SQFFSFGWWM MLFSVVLLAI MYMCFSLPQI LPDHVLKWIN IGISDLGETS ASSNMRGGFE
RIGRDDMLPP NSPLARIGSR GGLEKSGGGG TDSRLEKPIR RDEHIASSEV ISPHGANSPD
TGGGGKGGGS SHAGRGSSSS SSSGNPVDTR STDSRGSASG ISKDETFYQS ETPDAGSGEY
|
|---|
| |