Gene YpsIP31758_B0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_B0022 
Symbol 
ID5384241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009705 
Strand+ 
Start bp28990 
End bp30117 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content40% 
IMG OID640857131 
Productshufflon-specific DNA recombinase 
Protein accessionYP_001393320 
Protein GI153930697 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones61 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACTA GAGTTAAAAA CATACCACTC AGTAAGGCTC TAGATATCTA TTTGGATAAA 
ATTTCCTTTT TCAAAAAAGG CGGAATGCAA GAGCATTACA GAGTTAACAC AATTAAAAAG 
TATAAATTAA GTACATTGTT AACAAATAAT ATAACGACTG TAGATATTGC AGAATATCGA 
GACGAAAGGT TAAAAACTGT AAAACCAAAC GGGAAAACAA TTTCTTCGAA TACTGTTCGA 
CTTGAGTTAG CACTATTATC CCATTTATTC AAAGTTGGTA TTGTAGAATG GGGCATTGCA 
AGAGAAAACC CAGTTTTGTT GGTTAGAAAA CCGAAAGCAT CTGAAGGCAG AAATAGAAGG 
GTGCAACCCG CAGAGCACCG CAGACTGATA AGATATGCGG ATGAACATTC AACGGGAGAA 
TGTGCTTCAA TCATTAATTT AGCCATTGAG ACTGCAATGA GACAAGGTGA GATACTGTCT 
CTTCAGTGGG AGTACGTCGA TCTTCGACAG GGTGTGGCTC ACCTACCTGA GACTAAGAAT 
GGCACCTCAC GCGACGTACC CTTGTCCGCT AAGGCTCGTG AGATATTGCG TAAATGCAGT 
CCTAAGTCAT CGGGTTCCGT GTTCAGCTAT ACCAGTAATG GGTTTAAGTC TGCATGGCGC 
TGCATTATTA TAAAGTCTGG CATAAAAGAC TTACATTTCC ATGACTTACG ACATGAGGGT 
GTCTCTCGGT TTGTCGAGTC AGGTAGGCTT AATATCATGG AGGTTGCTGC TATCAGCGGC 
CATAAATCAC TTTCTATGCT CAAACGGTAT ACCCATTTGA AAGCAAGTGA TCTGACTAAG 
AAACTGGATA AAAAGAAGAC TCGGTATGAG AGCATTACAT CCGTAATACA ACCCTATTCC 
GCGACAATTA CCGTCGATAT GAGTAGAGTT AAACTACAGT TTTGCGATTT TGATGATCTC 
ATCGTTGATG AAAAAAACTA TGCAGACGCG ATAGAAAAGG CGTCAGGCTC GTTATTAAAA 
ATGCTTTGTC TTATGCTGAA AAATGGTGAA AAGATCCCTA ATCCCAGCTT ACCCCAAAAT 
GGGCCTTTTA TCATGATAGA TCCATTGAAT GTTAATTATG TCTGCTAG
 
Protein sequence
MKTRVKNIPL SKALDIYLDK ISFFKKGGMQ EHYRVNTIKK YKLSTLLTNN ITTVDIAEYR 
DERLKTVKPN GKTISSNTVR LELALLSHLF KVGIVEWGIA RENPVLLVRK PKASEGRNRR 
VQPAEHRRLI RYADEHSTGE CASIINLAIE TAMRQGEILS LQWEYVDLRQ GVAHLPETKN 
GTSRDVPLSA KAREILRKCS PKSSGSVFSY TSNGFKSAWR CIIIKSGIKD LHFHDLRHEG 
VSRFVESGRL NIMEVAAISG HKSLSMLKRY THLKASDLTK KLDKKKTRYE SITSVIQPYS 
ATITVDMSRV KLQFCDFDDL IVDEKNYADA IEKASGSLLK MLCLMLKNGE KIPNPSLPQN 
GPFIMIDPLN VNYVC