| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_A0056 |
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| Symbol | |
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| ID | 5384098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009704 |
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| Strand | + |
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| Start bp | 14774 |
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| End bp | 16195 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640857062 |
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| Product | conjugal transfer protein TrbL/VirB6 |
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| Protein accession | YP_001393251 |
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| Protein GI | 153930596 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 56 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTGTTT TAGAACTGGT AATTTCGAAA AAAGTCCTGA GAAAAAGTGG TAACACCATG
AAAAAAATCT CTCTGTCCGT ATTAGCTGTA GTGCTCCTGA TTGTGGCTCT TCAGGCGCAA
GCTGGCACCG GCATTAATAG TGCTGGCTTA CTTGATGACA TATTAGAACG TTTCGCTAAT
ACGGCCTCCG GATGGGGAGA TCGCATAGTT AGCTATGGTC TGTGGCTATT TTGGGGACTA
ACCCTTCTTA GCATGGTATG GACTTACGGC ATGATGGTAT TAAAGAAATC GGATATTCAA
GAGTTCTTTG CGGAAACAAT ACGTTTTCTA GCCGCCACCG GTTTCTTTTT ATGGATATTA
GTTAATGGCC CAGCCATTGC TATTTCAATA ATTAATACCT GCCGCCAAAT AGCGGCTAAC
GCTTCTGGTT TAAGTAATGC TTTATCACCG TCAGGCATTG TAGATATTGG TTTCGATATT
GCCGGAAAAG TGGTTGATAA ATCATCTATA TGGTCACCGG CTGACTCCAC TGTTGGACTG
TTGGTTGCAA CCGTTATTTT ATGCATGTTG GCCCTAGTCG CAATCAACAT GCTCTTAATG
CTAATTACCG GCTGGCTCTT AGCTTACGCT GGCGTTTTTA TTCTTGGATT CGGCGGTGGC
CATTGGACTC AAGATATTGC CATAGCGTAT TACAAGCAAG TACTCGGGGT AGGTATACAG
ACTTTCGTCA TGATCCTCTT AGTCGGTATT GGGCAATCAT TTATTGACCA GTATTACGCG
GCGATGGGTG ATGACATGGC CCTTAAAGAA CTGTTGGTTA TGCTCGTTGC TTCCTTCGTT
CTATTAATGT TAGTTGCTCA ACTACCACCA ATGTTTGCGG GAATTGTCGG AGCCGGTTCT
GGAGGCGGTT CATTGGCGTT CGGTATGGGG GCGGCCCTTG GAGCAGCAGG TATGGCCGCA
GCTACAGCAG GTGCCGCTGG TGCCGCCGCA ATCAGTGGAG CAACAAGCGC CGCAGGTGGA
ATGTCAGCGC TTCAGGCAGC ATTTGAATCA GCGCAGCAAA GCATGGACGC TGGCAGTAGC
CCTAGTGGTG AAGGACGTAG CTCTTCAGGT GGAAGTCTTT CAGAAGCAAT GGGAAGGGCG
GGGGGTTTTG CTAGGTCGAT GGGATCAAGT CTTGTCGATG CTGCCCGTGA TGTTGCTCAA
GAAAAAGCTG GAGCAATAAA AGACTCAATT CAGGAAAGAG TCTCTGAAAC CACTGGTGGA
AAAATGGCTG ACTCGATCCG TGAAAGTAGT GGAATGAATA TTGGAAATGA TAACAGTCAA
TTTGATGGTG ATGGTCTAGG GGCTGGAAAC AATGCAGGAA ATAGCGCTTC CACACCAGAA
ACCGATGAAG AAATGATTGA TCAATTTGTT AATAAAAAAT GA
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| Protein sequence | MTVLELVISK KVLRKSGNTM KKISLSVLAV VLLIVALQAQ AGTGINSAGL LDDILERFAN
TASGWGDRIV SYGLWLFWGL TLLSMVWTYG MMVLKKSDIQ EFFAETIRFL AATGFFLWIL
VNGPAIAISI INTCRQIAAN ASGLSNALSP SGIVDIGFDI AGKVVDKSSI WSPADSTVGL
LVATVILCML ALVAINMLLM LITGWLLAYA GVFILGFGGG HWTQDIAIAY YKQVLGVGIQ
TFVMILLVGI GQSFIDQYYA AMGDDMALKE LLVMLVASFV LLMLVAQLPP MFAGIVGAGS
GGGSLAFGMG AALGAAGMAA ATAGAAGAAA ISGATSAAGG MSALQAAFES AQQSMDAGSS
PSGEGRSSSG GSLSEAMGRA GGFARSMGSS LVDAARDVAQ EKAGAIKDSI QERVSETTGG
KMADSIRESS GMNIGNDNSQ FDGDGLGAGN NAGNSASTPE TDEEMIDQFV NKK
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