Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_A0054 |
Symbol | |
ID | 5384086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009704 |
Strand | + |
Start bp | 12438 |
End bp | 13817 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640857060 |
Product | conjugal transfer protein TrbI |
Protein accession | YP_001393249 |
Protein GI | 153930612 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 57 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAATA CCGATAATCA AATGTCTCCA TCCAACTCTC CTGGTTCAAT AGGAAAAACG GGTGTTCGTC GAGTGAATAA TCTTCCACTA ATTATTGTTC TCTCTGTGAT AACAATATTT ATCGCTATTA TTGCTATGGT TGCAGTAAAA AGGTCTGACC AACAAAATCA AGCCCCTGAA ACCCCAAAAT CAGAAAAAAC AGTTAGCAGC TCTTCAATGG CCGCAGATAT TGTCGCTGGC CATAATAACG GTATTATCCC ACCAGAACAG ATTACCGCCC CAACTCAAGC ATCAGAACCA ACTGAGCCAA CAGAACCAAC AACAGCGATT CCAGTTGCAA AAGTTGATAA CCCAAATGAA CCACCAGTAC CTCCTCGTAA TAACGGGAGC CGCCAAGATA TACCTAACGA TCCCGATTTA GACCGTATAA AAATGGCAAA GCTGCAACAA TTTGAAGAAG CAGTTAAAGC TAAGACAACT GTTTCTATTC CAACACTTCG CGATAATGCA ACCGGCGCAG ATGGGGCAAC ACCGACAAGA GATCAAACCT TGGCGCGCTT AGAAGCTGTT CGGCGTCAAA TTGATCAAAC ACAAAATGAA GACCCAACTT CGGCCTACAA AAAACGCTTA CAGCAATTGC AAGGTAATGG CGGGATGAGC GGAGATAACG CGAGTTCTGG CGGTGATGGC CTTGCTACAT CCAGTAGCAA CGATATTGAA CAATTTGCCG GTACTGGCGT AACAGACCGT TGGGCATTGA ATACAAAAGT TGAAGCTCCT CGTTCACCAT TTGAAATTAG AGCTGGTGCG GTTGTTCCTG GCGTAATGAT CAGTGGCGTT AATTCTGATT TGCCTGGTCA AATAATGGGC CAAGTGACAC AAGATGTATT TGATACTCCA ACGGGCAAAC ATCTATTAAT TCCTCAAGGA ACTCGGCTGA CTGGCTCATA CACAAGTGAT GTCGCTTTTG GTCAGTCAGC AGTAATGATT GCTTGGCAAC GTATGATTTT CCCTGATGGA AAGGCGCTAG ATATTGCAGC AATGCCCGGA GCTGATAGTG CCGGTTATTC CGGCTTCCGA GATCAAGTTA ATAATCATTT ATTCCGGATA TTTTCCTCAG CATTCCTACT CTCTGGCGTT ACTGCGGGGG TGACGTATAG CCAAGGGAGA AATGAGAACA GCAATGGGAA TAATAGCCCT ACCGCAAGCA GCGCATTAAG TGAAGCGTTA GGTCAACAGT TTGGCCAAGT CACCGCCCAA ATGATTGCCA AGAATTTAAA CATTGCACCA ACTTTAGAAA TTCGTCCTGG TTATCGCTTC AATATTATTG TCATTAAAGA TATGACATTT AAAAAGCCTT ATAAGCCATT TGATTACTAA
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Protein sequence | MANTDNQMSP SNSPGSIGKT GVRRVNNLPL IIVLSVITIF IAIIAMVAVK RSDQQNQAPE TPKSEKTVSS SSMAADIVAG HNNGIIPPEQ ITAPTQASEP TEPTEPTTAI PVAKVDNPNE PPVPPRNNGS RQDIPNDPDL DRIKMAKLQQ FEEAVKAKTT VSIPTLRDNA TGADGATPTR DQTLARLEAV RRQIDQTQNE DPTSAYKKRL QQLQGNGGMS GDNASSGGDG LATSSSNDIE QFAGTGVTDR WALNTKVEAP RSPFEIRAGA VVPGVMISGV NSDLPGQIMG QVTQDVFDTP TGKHLLIPQG TRLTGSYTSD VAFGQSAVMI AWQRMIFPDG KALDIAAMPG ADSAGYSGFR DQVNNHLFRI FSSAFLLSGV TAGVTYSQGR NENSNGNNSP TASSALSEAL GQQFGQVTAQ MIAKNLNIAP TLEIRPGYRF NIIVIKDMTF KKPYKPFDY
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