| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_A0050 |
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| Symbol | |
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| ID | 5384117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009704 |
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| Strand | + |
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| Start bp | 7823 |
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| End bp | 10360 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640857056 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_001393245 |
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| Protein GI | 153930569 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGAAT ATATTCCTAT AGCCTATGGA ATATTAGGAT TTTTATTGGT TCTAATCCTA
TTTTCCTTAA TACGCGCTGC AAATAACGAG ATCAGCTTAA AAAAATTTCG GTCAAAAGAT
GCTGGGGTAT CCGATTTACT TAACTATGCA GCTGTTGTAG CAGATGGCGT AATCGTGGGT
AAAAATGGCT CCTTTATGTC CGCATGGTTA TATAAAGGTG ATGATAATGC GAGTAGCACT
GACGCCCAAC GGGAGCTAAT TTCATTTCGT ATCAATCAAG CATTTGCCAA AATGGGTTCT
GGCTGGATGG TACATATAGA TGCCGTTCGT CGCCCTGCGC CAAATTACAG TGAGACAGGA
GCATCACACT TCAGAGATCC AATATCAGCG GCAGTTGATG AAGAACGTCG TCAATACTTT
GAAAGTTTAG GGACGTTATA TGAAGGCTTT TTTGTCTTAA CCTTAACGTG GTTCCCTCCA
TTACTGGCGC AAAGAAAAAT AATAGAATTG ATGTTTGATG ATGATTCAGA AAAACACAGT
AAAACATCAC AAACTCATCA CTTAATCGAG CAATTCCAAA CAGAAACAAA AAATTTCGCA
GATCGCCTTT CTTCATCAAT ATCCCTAGTT CAATTATGTA GTGAAAAAGT AATCAATGAA
GATGGCAGCG AAGTTACCCA TGATAATCTA CTGAGTTGGT TGCAATTCTG TTTAACCGGA
ATTATTCAAC CTATATTATT ACCAAACAAT CCAATGTATA TAGATGCTCT AATTGGTGGC
CAAGAGCTTT ATGCGGGCGT TGTTCCGCGA ATAGGCCGCA AATTTATTCA ATGTGTGGCC
ATTGAAGGTT TCCCATTAAA TTCTTATCCA GGAATATTAT CTTCATTGGC TGAGTTATCT
ATTGAATATC GCTGGTCAAC ACGATTTATA TTTTTAGATA ATTTTGAAGC GGTAAGTCAT
TTAGAAAAAT TCCGTAAAAA ATGGAAGCAA AAAATTCATG GTTTCTTTGA TCAGCTATTC
AACACTGGTC GCGGAGATGT CAATGAAGAT GCTTTAAGCA TGGTTGGGGA TGCCTCAGCA
GCCATAGCAG AAACAAATAG TGGCATGGTT AATCAAGGAT ACTACACAAA TAACATCATC
TTAATGGGGG AAGATAGGGC GCTTGTAGAA GCTTCAGCAC GTCGAGTTGA AAAAGAGATT
CAGCGTCTAG GGTTTGCATC CAGAACCGAA ACGATAAATA CAATGGACGC ATTCTTTGGG
TCTTTACCTG GTCATGGTGT GGAAAATGTT AGGCGACCTC TCATGAACAC CATGAACGTT
GCTGATATGA TTCCAACCAG CACTATTTGG ACTGGTGAAA ACTACGCCCC TAGCCCTCTA
TATCAGCCAA ATGCTCCAGC ACTCATGAGT TGTGTTACAA ACGGTAGCTC TCCTTTTAGG
TTAAATCTAC ACGTTCGTGA TTTAGGTCAT GGTTTTATGT TTGGCCCAAC GCGGTCAGGG
AAATCAACCC ATTTATCAAC TATTGCCATG CAGTTTCTAA GATATTTTGG CTCTCGCGTT
TATAGTTTTG ATAAAGGGAT GTCAATGTAT CCCACTTGTA AAGCTGTTGG GGGAAATCAT
TTCACTGTTG CTGCCAATGA TGACAAATTA TCTTTTGCTC CTTTATCAAT ATTAAAAACC
AGGAGTGATA AAGCGTGGGC AATGGAATGG ATAGATACGA TTCTGGCTTT AAACGGAGTT
ATAACAACAG CTGCTCAGCG CAACGAAATT GCAAAAGCAA TCGTCAATAT GGCGGAGAGT
AATTCTAAAA CCATATCTGA GTTTTCATTA TTAATTCAAG ATGAAGGTAT AAGGAATGCA
CTGAAACAAT ATACAGTTGA TGGCTTGATG GGTCATTTAC TTGATGCTGA GGAAGATGGA
TTAACCCTTG CTGACTTCAT AACATTTGAA ATTGAAGATT TAATGAACCT AGGCGAAAAA
TTTGCGCTTC CAGTTCTTCT TTATTTATTC AGACGTATAG AAACATCTTT AGATGGTCGA
CCAACATTAA TCATTCTTGA CGAAGCATGG TTAATGTTAG GCCATGAGGT ATTCCGTGAA
AAAATTCGTG AGTGGCTTAA AACCCTCGCA AAATTGAATT GCAGTGTATT AATGGCTACT
CAAAACCTTT CTGACGCAAG TAATTCTGGA ATATTAGACG TTATTGTCGA ATCTACCGCC
ACGAAAATTT ATCTTCCTAA TGTTAACGCC AGAGAAGAAT CTGCGGCAGC TCTCTATACC
CGAATGGGCC TTAACCCTCG CCAAATTGAG ATCATCGCTT CAGCGGTACC AAAACAAGAT
TACTACTTCG TAAGTGAGAA GGGTCGCAGA TTATACAACC TTGCATTAGG CCCGTTAGCA
CTCGCATTCG TGGGAAGTAC AGATAAAGAG TCCATTGCTG CGATCAAGGA GTTAGAAGCA
CGATACGGTG ATGCTTGGGT ACATGAATGG TTACGAATCA AAGGCATTAG CCTTAATGAT
TATGGAGTTG CAGCATGA
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| Protein sequence | MIEYIPIAYG ILGFLLVLIL FSLIRAANNE ISLKKFRSKD AGVSDLLNYA AVVADGVIVG
KNGSFMSAWL YKGDDNASST DAQRELISFR INQAFAKMGS GWMVHIDAVR RPAPNYSETG
ASHFRDPISA AVDEERRQYF ESLGTLYEGF FVLTLTWFPP LLAQRKIIEL MFDDDSEKHS
KTSQTHHLIE QFQTETKNFA DRLSSSISLV QLCSEKVINE DGSEVTHDNL LSWLQFCLTG
IIQPILLPNN PMYIDALIGG QELYAGVVPR IGRKFIQCVA IEGFPLNSYP GILSSLAELS
IEYRWSTRFI FLDNFEAVSH LEKFRKKWKQ KIHGFFDQLF NTGRGDVNED ALSMVGDASA
AIAETNSGMV NQGYYTNNII LMGEDRALVE ASARRVEKEI QRLGFASRTE TINTMDAFFG
SLPGHGVENV RRPLMNTMNV ADMIPTSTIW TGENYAPSPL YQPNAPALMS CVTNGSSPFR
LNLHVRDLGH GFMFGPTRSG KSTHLSTIAM QFLRYFGSRV YSFDKGMSMY PTCKAVGGNH
FTVAANDDKL SFAPLSILKT RSDKAWAMEW IDTILALNGV ITTAAQRNEI AKAIVNMAES
NSKTISEFSL LIQDEGIRNA LKQYTVDGLM GHLLDAEEDG LTLADFITFE IEDLMNLGEK
FALPVLLYLF RRIETSLDGR PTLIILDEAW LMLGHEVFRE KIREWLKTLA KLNCSVLMAT
QNLSDASNSG ILDVIVESTA TKIYLPNVNA REESAAALYT RMGLNPRQIE IIASAVPKQD
YYFVSEKGRR LYNLALGPLA LAFVGSTDKE SIAAIKELEA RYGDAWVHEW LRIKGISLND
YGVAA
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