| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_A0025 |
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| Symbol | |
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| ID | 5384116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009704 |
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| Strand | - |
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| Start bp | 45463 |
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| End bp | 47400 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640857097 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_001393286 |
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| Protein GI | 153930564 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.000549825 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAA AATCTAATAG TGCTGTTGGC CCTCAGACTA AAGCCAGTCG AACCAAAAAA
AGTAAGTTGG TTCCTATGCT GGCTATAACT TCATTGGCCG CAGGGGTACA GGCAGCAACT
CAGTATTTCG CTTACGCATT TAATTACCAA AGTGTTTTAG GTTCCAACCT CAATCAAATA
TATCCACCCT GGGCCATTTA TACATGGTGG GATAAGTGGC ATGACATATA TCCCACTTAT
TTTACTACCG CTGGCAGCGT AGGAACGATG GTTGGAGCCG CAGGGCTAAT TGGATGCGCT
TTGATAAAAA TGATTTCTTC TCATTCTTCA AAAGCGAATG AGCATTTACA TGGTTCGGCA
CGTTATGCAG AAAAGAAGGA CATATTAGAG GCCGGATTAT TAGGGAACAA TGAAGGTGTT
TATGTTGGGG CTTGGGAGGA CGATAAAGGG AAGCTGCATT ATCTTCGTCA CAACGGGCCA
GAACATATCC TTACTTACGC CCCTACACGT TCAGGTAAAG GCGTCGGTCT GGTTGTCCCA
ACCTTATTAT CATGGCCACA CAGTGCAGTT ATCACTGATT TAAAGGGGGA ATTATGGGCC
ATGACTGCCG GATGGCGAAA AGAGTACGCC AAAAATAAAA CTATCCGTTT CGAACCTGCA
ACGTTAAACG GCTCTGCTCG ATGGAACCCG TTAGATGAAA TACGTATAGC AACGGAATAT
GAAGTCGGGG ATGTACAAAA CCTATCGACA TTGATTGTAG ATCCTGATGG TAAAGGTCTG
AATGACCACT GGCAGAAAAC ATCCCAAGCT CTGATTGTAG GTTTGATACT CCATGCTCTT
TATAAAGCCA AAGAGGAGGG TACACCGGCC ACCTTGCCAT ACATTGATCG AATGCTATCA
GACCCTAATA AGGACATTGC TGAGCTATGG ATGGAAATGT CTCAGTATGG GCATGTAAAT
GGCGAAAATC ACCCTGTAGT GGGTTCATCG GCTCGGGATA TGATGGATAG GCCCGATGAT
GAAGCCGGTT CGGTACTATC TTCGGCCAAG TCATATCTAT CTCTTTATCG TGATCCAGTG
GTTGCCCGTA ATGTAAGTTC ATCTGATTTC TGCATCAAAG ACTTAATGAA TCACGATGAT
CCAGTCAGCC TTTATATTGT TACCCAACCA AACGATAAGG CCCGTCTCAG GCCACTTGTC
CGTGTCATGA CTAATATGAT CTTTAGACTG TTAGCAGACA AAATGGAGTT TGAGAGAGTA
CAACAAAAGG TTCCTCGCTG GCGTCAGATT TTGGCAAAAT TTGGTTTCAA ACAACCCGCT
CTATCATACA TTCGTTCTAA AAAAACATAT AAGCACCGGC TATTGGGAAT GATTGATGAG
TTTCCTAGCT TGGGTAAGCT TGAAATTTTG CAAGAGTCGT TGGCATTTGT CGCAGGTTAT
GGGATTAAGC TATATCTTAT TTGCCAAGAC ATTAACCAAT TAAAAAGCCG TGAAACAGGT
TATGGCCCTG ATGAAACGAT CACTTCTAAC TGTCATGTAC AAAATGCCTA CCCACCAAAC
CGAGTTGAAA CAGCGGAACA CCTATCTAAA TTAACTGGCC AAGCCACTGT TGTAAAAGAG
CAGATTACTA CCAGTGGTAG AAGAGCGAGT GCAATGTTAG GGCAGGTATC AAGGACAATA
CAGGAAGTAC AGCGGCCATT ACTGACTGTA GATGAGTGTT TACGGATGCC TGGGCCGAAG
AAAGACGCTG AGGGGCAAAT TACAGATGCG GGGGATATGG TGGTCTATGT GGCTGGTTAT
CCCACTATTT ATGGAAAGCA GCCTCTTTAT TTCAAAGACC CTATTTTTAC TGCCCGAGCT
GCCGTACCTG AACCAAAATT TAGTGACAAG ATTAGAGGAA ACTTACTCCT TACAGAAGGG
GAGGTTATCG CTTTATGA
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| Protein sequence | MTTKSNSAVG PQTKASRTKK SKLVPMLAIT SLAAGVQAAT QYFAYAFNYQ SVLGSNLNQI
YPPWAIYTWW DKWHDIYPTY FTTAGSVGTM VGAAGLIGCA LIKMISSHSS KANEHLHGSA
RYAEKKDILE AGLLGNNEGV YVGAWEDDKG KLHYLRHNGP EHILTYAPTR SGKGVGLVVP
TLLSWPHSAV ITDLKGELWA MTAGWRKEYA KNKTIRFEPA TLNGSARWNP LDEIRIATEY
EVGDVQNLST LIVDPDGKGL NDHWQKTSQA LIVGLILHAL YKAKEEGTPA TLPYIDRMLS
DPNKDIAELW MEMSQYGHVN GENHPVVGSS ARDMMDRPDD EAGSVLSSAK SYLSLYRDPV
VARNVSSSDF CIKDLMNHDD PVSLYIVTQP NDKARLRPLV RVMTNMIFRL LADKMEFERV
QQKVPRWRQI LAKFGFKQPA LSYIRSKKTY KHRLLGMIDE FPSLGKLEIL QESLAFVAGY
GIKLYLICQD INQLKSRETG YGPDETITSN CHVQNAYPPN RVETAEHLSK LTGQATVVKE
QITTSGRRAS AMLGQVSRTI QEVQRPLLTV DECLRMPGPK KDAEGQITDA GDMVVYVAGY
PTIYGKQPLY FKDPIFTARA AVPEPKFSDK IRGNLLLTEG EVIAL
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