| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Anae109_4242 |
|---|
| Symbol | |
|---|
| ID | 5378351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter sp. Fw109-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009675 |
|---|
| Strand | + |
|---|
| Start bp | 4971872 |
|---|
| End bp | 4973854 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640845770 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001381404 |
|---|
| Protein GI | 153007079 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCT CCGAGGTCAC CGCAGAGCGA CGCATCGACG AGGAGCTCGC CCTCCGCGCC
GTCGTGGAGG GGACCGCCTC TGAGACCGGG CAGGAGTTCT ACCGGGCGCT CGTCAGGAAC
CTGGCCCAGG CGCTCGACAC CTACGGCGCC TGGCTCACCG AGTACGACGA GCAGCGGGAT
CGGCTCCGCG CCCTCGCGTT CTGGTTCGGG GGGCAGTGGA TGGAGGGCTT CGAGTACGGC
ATCGCCGGGA CCCCCTGCGA GACCGCGGTG CGAGAGCGGC GCGTCGTCCA CGTCCCCGAT
CGCGTCATCG AGCTCTACCC CAGCGACGAG GTGAGGTTCC CTCGCTCCGG CGTGGTCAGC
TACCTCGGCG TCCCCCTGCT CGGCGCGGAT CAGCGCGTGC TCGGGCACCT GGCGGTGGTG
GACATCCGCC CCATCCCTGC CGAGAAGCGG CTCCTCACGC TGTTCGGGAT CTTCGCGAAC
CGCGCGGTCG CCGAGGTCCG CCGCGTCCGC GTGGAGGCGG AGCTGCGCGA GCGCCAGGAG
AAGCTCTCCG GCCTCATCGG CAGCGCCATG GACGCGATCG TCGAGTTCGA CGGCGACTTC
CGCATCACCC TCCTGAACGC CGCCGCCGAG AAGACGTTCG GCTGCATCGC CGTGGAGCGC
CGGGGCCGCC CGGCGGAGGA GCTGCTCGGC GCGGCGGCGA CGGCCAAGCT GAGGGCGCTC
AGCGGCGAGC TCGAGCGGCG CGCGGGAGGT GAGCGCTCGC TCTGGATCCC CGACGGGCTG
GTGGCCGAGC CGCCTGGACG CAAGCCCTTC CCCGCGGAGG CGACGCTCTC CCGCTTCGAG
GTCCGGGGCC GGCCGTTCTT CACGCTCATC CTGAGGAACG TGGACGAGCG GGTCGAGGCC
GAGCGGCGGA TCCGCGCGCT CACCGCCCAC GCCGATTACC TGCGCGAGGA GCTCGCGGCG
GAGCACGGGT TCCACGAGAT CCTGGGGCGC AGCCCGGCCC TGCGCCGGGC GCTCCAGGAC
GTGACGCAGG TGGCGGCGAC GGAGGCGACG GTGCTCCTCG TCGGGGAGAC GGGCACCGGC
AAGGAGCTGT TCGCCCGCGC GATCCACGAC CGGAGCGCGC GCCGCGCGCG GCCGCTCGTG
AAGGTGAACT GCGCGGCCAT CCCGGCGACC CTCATCGAGA GCGAGTTCTT CGGGCACGAG
CGCGGCGCCT TCACCGGCGC GACCCAGCGG CGCGATGGCC GGTTCGCGCT CGCCGACGGC
GGCACCATCT TCCTCGACGA GATCGGCGAG CTCCCGCTGG AGCTGCAGGG CAAGCTGCTG
CGGGTCCTGC AGGAGGGCGA GTTCGAGCCG GTCGGCGCCT CGCGCACGCG AAGGGTGGAC
GTGCGCGTGG TCGCGGCGAC GAACCGCGAT CTCCAGCGGG CGGCGCGCGA GGGCACGTTC
CGCCAGGACC TCTACTACCG GCTCAGCGTC TTCCCGATCC AGCTCCCGCC GCTGCGGGAG
CGCGGCGACG ACGTCGTCCT GCTCGCCGCC GCGATGGCCG AGAAGCTCGC GCCCGGTCTC
GGGCGAAGGG TCGCCCCGCC GGACGCCGCG GACGCCGCGG CGCTCCGGTC GTATCCGTGG
CCGGGGAACG TCCGGGAGCT GCGCAACGTG GTCGAGCGGG CGATCATCAC CTCCACCGAC
GGGCGTTTGA ACCTGCACCG GTGCCTGCCC GCGCCAGCGG TCGCGCCCGC GAGCGAGCCG
GCGCCGGCCA CGCGGGGCGA CCCGGAGGTC CTGACCGACC GGCGCCTGCG GGAGCTCGAG
CGCGACAACC TGCTCGCCGC CCTCGAGCGG ACGCGCTGGA GGGTCGGCGG CAAGGACGGC
GCCGCGGCCC TGCTGAGCGT GAGCCCGTCC ACGTTGAAGT CGCGCATGAA GGCGCTCGGG
ATCGCGCGGC CCGCCGCGGG CGCCGGCGCG GGCGCCGCGC TCGGCGATCT CGCCCATCGC
TGA
|
|---|
| Protein sequence | MQPSEVTAER RIDEELALRA VVEGTASETG QEFYRALVRN LAQALDTYGA WLTEYDEQRD
RLRALAFWFG GQWMEGFEYG IAGTPCETAV RERRVVHVPD RVIELYPSDE VRFPRSGVVS
YLGVPLLGAD QRVLGHLAVV DIRPIPAEKR LLTLFGIFAN RAVAEVRRVR VEAELRERQE
KLSGLIGSAM DAIVEFDGDF RITLLNAAAE KTFGCIAVER RGRPAEELLG AAATAKLRAL
SGELERRAGG ERSLWIPDGL VAEPPGRKPF PAEATLSRFE VRGRPFFTLI LRNVDERVEA
ERRIRALTAH ADYLREELAA EHGFHEILGR SPALRRALQD VTQVAATEAT VLLVGETGTG
KELFARAIHD RSARRARPLV KVNCAAIPAT LIESEFFGHE RGAFTGATQR RDGRFALADG
GTIFLDEIGE LPLELQGKLL RVLQEGEFEP VGASRTRRVD VRVVAATNRD LQRAAREGTF
RQDLYYRLSV FPIQLPPLRE RGDDVVLLAA AMAEKLAPGL GRRVAPPDAA DAAALRSYPW
PGNVRELRNV VERAIITSTD GRLNLHRCLP APAVAPASEP APATRGDPEV LTDRRLRELE
RDNLLAALER TRWRVGGKDG AAALLSVSPS TLKSRMKALG IARPAAGAGA GAALGDLAHR
|
|---|
| |