| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Anae109_2221 |
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| Symbol | rpoB |
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| ID | 5377391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anaeromyxobacter sp. Fw109-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009675 |
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| Strand | - |
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| Start bp | 2521127 |
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| End bp | 2525377 |
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| Gene Length | 4251 bp |
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| Protein Length | 1416 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640843733 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001379407 |
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| Protein GI | 153005082 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.480629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.00212341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCGACGA CGATCCAGAA CAACTTCAGA ATCCGGCGAA ACTTCGGGAA GATCAACAAG
ATCGCCGAGA TCCCCAACCT CATCGCCATC CAGAAATCTT CCTACGACAA GTTCCTCCAG
GCCGACGTCC CGCCCGAGAA GCGCGAGGAC ACCGGCCTGC AGGGCGTGTT CAAGTCCGTC
TTCCCGATCA AGGATTTCAA CGAGACGAGC TCGCTCGAGT TCGTCAGCTA TCACCTCGAG
AAGCCGAAGT ACGACGTCGA CGAGTGCCAC CAGCGCGGCA TGACGTACTC CGCGCCGATC
AAGGTCGTGG TCCGCCTCGT CGTCTGGGAC AAGGACGAGG AGACGGGCGC CCAGTCGATC
CGGGACGTCA AGGAGCAGGA GGTCTACTTC GGCGAGATCC CGCTCATGAC GGAGAACGGG
ACCTTCATCA TCAACGGGAC CGAGCGCGTC GTCGTCAGCC AGCTGCACCG CTCGCCGGGC
GCCTTCTTCG ATCACGACAA GGGGAAGAGC CACTCCTCCG GCAAGCTCCT CTTCAACGCG
CGGATCATCC CGTACCGCGG GTCCTGGATC GACTTCGAGT TCGATCACAA GGACATCCTC
TACGTGCGCA TCGACCGCCG GCGGAAGCTG CCCGCGACGG TGCTGCTGCG CGCCCTCGGC
GGCGTGCCGG ACACGGCGAA GAAGACGCCG ATCGAGTTCC ACGGCTCGGC CGAGGAGATC
CTCAAGTACT ACTACGACAC GGAGACGATC CGGATCGAGG GGAAGGGGAA GTTCGAGAAG
GACCTGAACC CCGACCTGCT CAAGGGCCAG CGCGCGACGC GCGACATCCG CGATCCGAAG
ACGAACGAGA TCGTCGTCAA GAAGAACCGG AAGTTCACGG AGAGCGCGAT CAAGAAGCTC
GTCGCGGCGA AGATGAAGTC GCTGCCCATC GAGCCGGAGG AGGTCTACAC CAAGATCTCC
GCCGAGGACG TGGTCGACGA GCAGACGGGT GAGGTGCTCC TCGAGGTGAA CGAGGAGGTC
TCCGAGGAGA AGCTCGAGGA GCTGCGCAAG CGCGGCATCG GCGAGTTCAA GGTCCTCTTC
ATCGACAACC TGAACGTGCT GCCGTCGCTC CGCGACACGC TCATGCAGGA CAAGATCTCC
ACGCCCGAGG AGGCGATCAT GGAGATCTAC CGCCGCCTGC GCCCGGGCGA CCCGCCGACG
CCGGAGACGG CGACGAACCT CTTCGTCAAC CTCTTCTTCA ACGCCGAGCG CTACGACCTC
TCGAAGGTCG GCCGCCTCAA GCTCAACTAC AAGTTCGGGA TCGAGGAGCC GCTCGACAAC
ACCGTGGTCA CGAAGCGCGA CATCCTCGAG GTCGTCCGCT TCCTCATCGA CCTCAAGAAC
GGCACGCCGA ACAAGGACGT CGACGACATC GACCACCTCG GCAACCGCCG CGTCCGCGCG
GTGGGCGAGC TGCTCGAGAA CCAGTACCGC ATCGGCCTCG TTCGCATGGA GCGCGCGATC
AAGGAGCGCA TGAGCCTCCA GGAGATCGAG ACGCTCATGC CGCACGACCT CATCAACGCG
AAGCCGGTCA CCGCGGTCAT CAAGGAGTTC TTCGGCTCGA GCCAGCTGTC GCAGTTCATG
GACCAGACGA ACCCGCTCTC CGAGGTGACG CACAAGCGGC GCCTCTCGGC GCTCGGGCCG
GGCGGCCTCA CCCGCGAGCG CGCGGGCTTC GAGGTGCGCG ACGTCCACTC CACGCACTAC
GGCCGCATCT GCCCCATCGA GACGCCCGAG GGTCCGAACA TCGGCCTCAT CGCCTCGCTC
TCCACCTACG CGCGCGTCAA CGAGTACGGC TTCGTCGAGA CGCCGTACCG CAAGGTCGAG
AAGGGCCGGG TGACGGACGA GGTCTCCTTC TACTCGGCGC TCGAGGAGGA GAAGCACATC
ATCGCGCAGG CGAACGCGCC CGTGGACAAG AAGGGCGTCT TCACCGGCAA CATCGTCTCG
TGCCGCAAGG AGGGCGAGTA CATCAACGCC CGTCCGGACG AGGTCGATCT CATGGACGTG
AGCCCGAACC AGCTCGTGTC CGTGGCCGCC TCGCTCGTGC CGTTCCTCGA GAACGACGAC
GCGAACCGCG CCCTCATGGG CTCGAACATG CAGCGCCAGG CGGTGCCGCT GCTCCGCACC
CGGGCGCCGC TCGTCGGCAC CGGCATCGAG GGCATCGTCG CGCGCGACTC CGGCGTGTGC
GTCGTCGCCA AGCGCGACGG CGTCATCCAG TCCGTCGACG CGGCCCGCAT CGTGGTGAAG
GCGGACGTGC CGACCTCCGC GACCGACGTC GCGAACGAGG TCGACATCTA CAACCTCATC
AAGTACCAGC GGTCGAACCA GAACACCTGC ATCAACCAGA AGCCCATCGT GAAGCCGGGC
GAGCGGGTGA AGAAGGGCGA CGTCATCGCC GACGGGCCCG CGACCGAGAT GGGCGAGCTG
GCGCTGGGTC AGAACGTGGT CGTCGCGTTC ATGCCGTGGC AGGGCTACAA CTTCGAGGAC
TCGATCCTCC TGTCCGAGCG CTTCCTGAAG GACGACGTGT TCACCTCGGT GCACATCGAG
GAGTTCGAGT GCGTCGCCCG TGACACCAAG CTCGGCAAGG AAGAGATCAC CCGCGACATC
CCGAACGTCG GCGAGGAGGC CCTGAAGGAC CTCGACGAGT CGGGCATCAT CCGCATCGGC
GCGGAGGTGA AGCCGGGCGA CATCCTCGTC GGCAAGATCA CCCCCAAGGG CGAGACGCAG
CTCTCGCCGG AGGAGAAGCT CCTCCGCGCG ATCTTCGGCG AGAAGGCGGG CGACGTCCGC
GACAGCTCGC TGCGCGTGCC GCCGGGCGTC TCGGGCACCG TCATCAACGC GAAGGTCTTC
AGCCGCAAGG GCGTCGAGAA GGACGAGCGC GCGAAGGCCA TCGAGGAGAT GGAGGAGGCG
AAGCTCCTCA AGGACCAGAA CGACGAGATC CGCATCATCC AGGACTCGGC GTTCCAGAAG
ATCCGGCGCC TGCTGCTCGG CAAGGAGGTC TCCGGACGCC TCGTCGACGA CAAGGGCAAC
CAGCTCCTCA AGCGCGGCGA CGTCCTCGAC GACGCGCTCC TCGACACCGT GCCCCAGCGC
TACTGGGGCG AGATCGCGGT CGAGGGCGAC GTGCAGGACC TCGTCCGCAA GATCGTCGAG
AACTTCGAGG AGCAGAAGGA GCTCGTGAAG CTCCTCTTCG GCGAGAAGAT CGGCCGCCTG
AAGAAGGGCG ACGAGCTCCC GCCGGGCGTC ATCAAGATGG TGAAGGTGTA CGTCGCCATC
AAGCGCAAGC TCGCGGTCGG CGACAAGATG GCGGGCCGCC ACGGCAACAA GGGCGTCGTC
TCCCGCGTGC TGCCGGAGGA GGACCTCCCG TACCTCGAGG ACGGCCGGCC GGTGGACATC
GTCCTGAACC CGCTCGGCGT CCCCTCCCGC ATGAACGTGG GGCAGATCCT CGAGACGCAC
CTCGGCTGGG CCGCGAAGAA CGTGGGCTGG CGGCTCCAGG AGATGATCGA GAAGAACTTC
GGGCCGGATC AGCTCCGCAA GAAGCTGAAG AAGGCGTTCG AGGGCGTCGA GGGGAGCGAT
CGGCTCGGCC AGCTCATCGA CGAGCTGCCG GCGCAGGAGC TGCCCAAGCT CGCCACCAAG
CTCAAGGAGG GCATGCACGT CGCGACGCCG GTCTTCGACG GCGCGCACGA GGACGAGATG
AAGGCGCTCC TCGGCGAGGG CTCCGCGACG ATGCAGTCGA TCCTCTTCGA CGGCCGCACC
GGCGAGCCGT TCGACCAGGA CGTCACCGTC GGCGTCATGT ACATGCTGAA GCTGCACCAC
CTCGTGGACG AGAAGATCCA CGCCCGCTCC ATCGGGCCTT ACTCGCTCGT CACGCAGCAG
CCCCTCGGCG GCAAGGCCCA GTTCGGCGGC CAGCGCCTCG GCGAGATGGA GGTCTGGGCG
ATGGAGGCCT ACGGCGCGGC CTACTCGCTG CAGGAGTTCC TCACGGTGAA GTCCGACGAC
GTGGTCGGCC GCACCCGCAT GTACGAGGCG ATCGTCAAGG GCGAGAACAC GCTCGAGTCG
GGCCTGCCCG AGTCGTTCAA CGTGCTCATC AAGGAGCTCC AGAGCCTCGC GCTCGACGTC
GAGCTCCTGG AGACGCCGGA GGCGAAGGCG GCGCGCGAGC AGGCCGAGGG CGAGCTCGGC
GGACCGCTCG GCACCCCGCG CGGCGCCGCC GCCGAGAAGA ACACGGCGTA G
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| Protein sequence | MATTIQNNFR IRRNFGKINK IAEIPNLIAI QKSSYDKFLQ ADVPPEKRED TGLQGVFKSV
FPIKDFNETS SLEFVSYHLE KPKYDVDECH QRGMTYSAPI KVVVRLVVWD KDEETGAQSI
RDVKEQEVYF GEIPLMTENG TFIINGTERV VVSQLHRSPG AFFDHDKGKS HSSGKLLFNA
RIIPYRGSWI DFEFDHKDIL YVRIDRRRKL PATVLLRALG GVPDTAKKTP IEFHGSAEEI
LKYYYDTETI RIEGKGKFEK DLNPDLLKGQ RATRDIRDPK TNEIVVKKNR KFTESAIKKL
VAAKMKSLPI EPEEVYTKIS AEDVVDEQTG EVLLEVNEEV SEEKLEELRK RGIGEFKVLF
IDNLNVLPSL RDTLMQDKIS TPEEAIMEIY RRLRPGDPPT PETATNLFVN LFFNAERYDL
SKVGRLKLNY KFGIEEPLDN TVVTKRDILE VVRFLIDLKN GTPNKDVDDI DHLGNRRVRA
VGELLENQYR IGLVRMERAI KERMSLQEIE TLMPHDLINA KPVTAVIKEF FGSSQLSQFM
DQTNPLSEVT HKRRLSALGP GGLTRERAGF EVRDVHSTHY GRICPIETPE GPNIGLIASL
STYARVNEYG FVETPYRKVE KGRVTDEVSF YSALEEEKHI IAQANAPVDK KGVFTGNIVS
CRKEGEYINA RPDEVDLMDV SPNQLVSVAA SLVPFLENDD ANRALMGSNM QRQAVPLLRT
RAPLVGTGIE GIVARDSGVC VVAKRDGVIQ SVDAARIVVK ADVPTSATDV ANEVDIYNLI
KYQRSNQNTC INQKPIVKPG ERVKKGDVIA DGPATEMGEL ALGQNVVVAF MPWQGYNFED
SILLSERFLK DDVFTSVHIE EFECVARDTK LGKEEITRDI PNVGEEALKD LDESGIIRIG
AEVKPGDILV GKITPKGETQ LSPEEKLLRA IFGEKAGDVR DSSLRVPPGV SGTVINAKVF
SRKGVEKDER AKAIEEMEEA KLLKDQNDEI RIIQDSAFQK IRRLLLGKEV SGRLVDDKGN
QLLKRGDVLD DALLDTVPQR YWGEIAVEGD VQDLVRKIVE NFEEQKELVK LLFGEKIGRL
KKGDELPPGV IKMVKVYVAI KRKLAVGDKM AGRHGNKGVV SRVLPEEDLP YLEDGRPVDI
VLNPLGVPSR MNVGQILETH LGWAAKNVGW RLQEMIEKNF GPDQLRKKLK KAFEGVEGSD
RLGQLIDELP AQELPKLATK LKEGMHVATP VFDGAHEDEM KALLGEGSAT MQSILFDGRT
GEPFDQDVTV GVMYMLKLHH LVDEKIHARS IGPYSLVTQQ PLGGKAQFGG QRLGEMEVWA
MEAYGAAYSL QEFLTVKSDD VVGRTRMYEA IVKGENTLES GLPESFNVLI KELQSLALDV
ELLETPEAKA AREQAEGELG GPLGTPRGAA AEKNTA
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