| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_4315 |
|---|
| Symbol | |
|---|
| ID | 5381610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ochrobactrum anthropi ATCC 49188 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009668 |
|---|
| Strand | - |
|---|
| Start bp | 1741498 |
|---|
| End bp | 1744002 |
|---|
| Gene Length | 2505 bp |
|---|
| Protein Length | 834 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640837004 |
|---|
| Product | DNA ligase D |
|---|
| Protein accession | YP_001372844 |
|---|
| Protein GI | 153011630 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGT CACTCGAAAC CTATCGCAGG AAACGCGATT TTACCCTGAC TAACGAGCCG
CGCGGTAAGT CTTCGCGCAC AAAACGCGAG CTCTTTGTCG TGCAAAAACA TGATGCTCGC
AGACTGCATT ATGATTTTCG CCTTGAGATG GATGGCGTGC TGAAAAGTTG GGCTGTGACG
CGAGGTCCAA GCCTTGTTCC TGGCGAAAAG CGACTGGCCG TGCATGTGGA GGACCATCCG
CTTGAATATG CGGACTTCGA AGGCACGATC CCTAAAGGCA AGTACGGTGG TGGTACAGTT
ATCGTCTGGG ATACAGGGCG TTGGAAATCC ACTGCTGATG CACATCAGCA ATACAAGAAA
GGGCATCTTG AGTTCGAGCT CACAGGGGAA AAACTCAAAG GTCGCTGGCA TTTGATCCGG
ATGCACGGAA AGCCAGACGA GAAGCGAGAG AATTGGCTCC TCATCAAGGG GGAGGACGAA
TTTTCCAGAA ATCCTGATGA ACCTGACATT CTTGTAGAGA TGCCGAAATC GGTAAAAACC
GGCCGCGCCA TCGCCGATGT CGAACACGAA GCGCCAGGAT GGTCATCGAA AACTGGTTCG
ATCAACAAAA AGTCGAACGC TCAAGGGGAT GGTGGGGGCG CAAATATCAA AAATGCGAAG
AAGCGACCGA TGCCGAGTTT CGTCAAACCT GAGCTCGCTA CGCTCGTATC AGTTGCTCCA
GATGGAAACC GCTGGCTTCA CGAGATCAAG TTCGACGGTT ATCGCATCCA GGCTCATATT
GCGGGGGGCA AGGTCGCCCT TTATTCGCGT GGGGGACTGG ATTGGACTGA AAAATTTGGC
CAGCAGATTG CCAGAGATCT TGTTGGTACG AGCGTGAACG AAGCCATATT TGATGGGGAG
ATCGTTGTCG AAAGCCAGTC GGGACTGTCT GACTTTTCAG CTTTGCAAGA GGATCTAAGG
GAGGGACGTT CTGATCGATT CGTTTATTAC CTTTTCGATC TACTGCATGT TGATGGCAAA
GACCTTCGCC AGACGCCTCT GGTTGAGCGC AAAACGCTGC TCGAAAAATT AATTTCTGCA
TCATCGTCAA CACTTCGCTT CAGCGAGGCC TTTGATGCCG ATGGGGCTGC GGTACTGAAG
AATGCCTGCG GACTTGGCCT TGAGGGCATT GTGTCGAAGC TCAGGGAGGC ATCTTATAGA
AGCGGTCGCA GCAACGATTG GCGTAAGTCG AAATGCATTG GACGACAGGA ATTCGTCATT
GCAGGCTATG TTCCGTCGAC GGTAACGCGA GCGGCAATCG GTTCGCTCCT TTTGGGTGTA
CAGGATAAGA AGGGGCTGGT TCCCGTAGGC CGGGTGGGAA CAGGCTTTTC GGTCAGGATT
GCAAAAGAAC TTTACAAACG GCTGCAAGCC ATGCGGCAGG GAGGGAGCCC ATTCGCCGTG
CCGCTGACGG CAGATGAAAG GCGCGGAGCC AAGTTCGTTA CACCGCTGCT GGTAGCGGAA
ATCGAATTTC GTGCCTGGAC TGCCGATAAG CGATTGCGTC ACGCGTCCTT CAGGGGGGTA
CGAGACGATA AGGCTGCCAA GGACGTCATA TGGGAGAAGC AAACCATGTC ACCCCGTATT
TCCAGTAAAG GCCCCGAGGA GATCGACGTG AAGCTCACAC ATCCCGACCG GGTTTACTGG
CCGGGCGAAG GTGTCACAAA ACAGGGTCTC GCAGATTATT ATTCCGCTAT CTGGTCCAGC
ATCGAACCTT TCATCGTCAA CCGCCCCCTG GCATTGTTAC GCTGCCCAAC CGGAATTGAC
GGAGAACACT TCTTTCAAAG GCACGCGTGG AAGGGGTTGA ATGAACATAT TATCGAAGTT
CAAGATCCAG AGAACAAGGA AGAGGAGCCT TATATCAGCA TTCGGGACTT CAACGGGCTG
ATCGGTCTGG TGCAAGCCGC GACGCTGGAA ATTCACCCCT GGGGTTCTAC GCTCAAAAAT
TGGGAGCTAC CGGATACGTT GACAATGGAT CTCGATCCGG GTGAGGGCGT TCCATGGTCG
CGCGTGATCG AAGCCGCAAT CGAGACCAAG GAACGTCTGG AAAAACTCGG ATTGAAGACG
TTTGTTAAAA CGTCCGGTGG CAAGGGACTA CATGTGGTCG CGCCATTGAA GCCGAAGGTC
GACTGGGACG CCCTCAAGAG CTTTACAAAG GCTATTGCCG ACCAGATGGC TGCAGACAGT
CCTGATCGCT ATGTTTCGAC GATTTCCAAG GCCAAGCGCA AAGGCAAAAT TCTTATTGAT
TATCTGCGCA ATCAGCGCGG CATGACTGCT GTAGCACCCT ATTCGCCGCG GGCACGTCCT
GGTGCTGCAG TTTCCATGCC GCTTGGGTGG GACGAAGTGA CGTCAGCAAT AGGCCCCGCC
CATTTTACTA TTGTCAACAC GCCGAACCGG CTGGCCGCAT TGAATAGCGA TCCCTGGCAG
GATTTTCGCA GCGCGGAAAC GCCGCTGCCT AAGCTGAAGA AATAG
|
|---|
| Protein sequence | MGQSLETYRR KRDFTLTNEP RGKSSRTKRE LFVVQKHDAR RLHYDFRLEM DGVLKSWAVT
RGPSLVPGEK RLAVHVEDHP LEYADFEGTI PKGKYGGGTV IVWDTGRWKS TADAHQQYKK
GHLEFELTGE KLKGRWHLIR MHGKPDEKRE NWLLIKGEDE FSRNPDEPDI LVEMPKSVKT
GRAIADVEHE APGWSSKTGS INKKSNAQGD GGGANIKNAK KRPMPSFVKP ELATLVSVAP
DGNRWLHEIK FDGYRIQAHI AGGKVALYSR GGLDWTEKFG QQIARDLVGT SVNEAIFDGE
IVVESQSGLS DFSALQEDLR EGRSDRFVYY LFDLLHVDGK DLRQTPLVER KTLLEKLISA
SSSTLRFSEA FDADGAAVLK NACGLGLEGI VSKLREASYR SGRSNDWRKS KCIGRQEFVI
AGYVPSTVTR AAIGSLLLGV QDKKGLVPVG RVGTGFSVRI AKELYKRLQA MRQGGSPFAV
PLTADERRGA KFVTPLLVAE IEFRAWTADK RLRHASFRGV RDDKAAKDVI WEKQTMSPRI
SSKGPEEIDV KLTHPDRVYW PGEGVTKQGL ADYYSAIWSS IEPFIVNRPL ALLRCPTGID
GEHFFQRHAW KGLNEHIIEV QDPENKEEEP YISIRDFNGL IGLVQAATLE IHPWGSTLKN
WELPDTLTMD LDPGEGVPWS RVIEAAIETK ERLEKLGLKT FVKTSGGKGL HVVAPLKPKV
DWDALKSFTK AIADQMAADS PDRYVSTISK AKRKGKILID YLRNQRGMTA VAPYSPRARP
GAAVSMPLGW DEVTSAIGPA HFTIVNTPNR LAALNSDPWQ DFRSAETPLP KLKK
|
|---|
| |