| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_3973 |
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| Symbol | |
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| ID | 5381259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ochrobactrum anthropi ATCC 49188 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009668 |
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| Strand | - |
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| Start bp | 1388797 |
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| End bp | 1390236 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640836659 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001372507 |
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| Protein GI | 153011293 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.16456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTCG TTCCCATCGA ACTCCCGGCG AAGGTAGCAA ATGCATTGAA GTATTCGCTG
CTGCTGGCTC GTTTGCGGGC AATACAGCTG AAGCTCCCGT CTTTACCGCT GTTGCTGCCT
GGGAAAAACA CTTTGCCAAC GCCGCTTACA TCACGGCCAA GGCTGCGCGG CGTGGCCTGG
ACAGGAAACC TGCTCGTATT GATATTCGTT GCAGGCTTCG GAATATGGGC AGTTTTCGCA
CCGCTTAAAA GTGCGGCGGT CGCTGTGGGT GTTGTCGAAG CGGAATCCAG CCGCAAGACC
ATTCAGCATC TGGAAGGCGG TATTGTTCAG CAGATCTATG TCCACAATGG CGATTTGGTC
TCCAACGGTC AGATTCTGAT CAAGCTGGAC GATACAAAAC CCAGGACGGA GCTGGTTGGC
ATTCAGGGCC AGCTGTGGGA CGCGCAGGCG AGCCGGGCTC GGCTGGTCGC TGAACAGGCG
AACGAGATGC AACTTTTGTT TCCACCGGAG CTGGAACAAC TCGCGCCGCA CAATCCGGCA
GTCAACGCCA TTGTCGTCGG ACAACGAAGA ATATTTGAAG CCCGTCGCGA CGTCTATCGA
TCTGAAATTG CCATAACGCA CGAGAAAATG GGGCAGGTGA AGGAAGAGAT AACCGGATTG
GCGGCGCAAA AAATGGCCTT GTCGTCCCGC ATCGAGATCA CGCGCCAGCA ACTGGACATG
ATAAATCCGC TTGTGAAAAA GGGGCTCGAG CGCAAAACGA GCGTATTGAA TCTCGCACGC
GAGAAAGCTG ATCTGGACGG ACAGCTGGGA GAGACCATAG CTCAGATGTC CCGCGCTTAT
CAGGTGATTA ATGAAGCGCA GGCCAATCTC GTCAAGCTGG AGAGTGATCG CCAAAACGAG
ATCGCAAAGG AACTGCGCGA GACCGAAAAC CAGCTTTTCC TGTTAAGCGA ACGATACCGC
GCGATCAACG ATCAACTGAT CCGGACAGAT ATCAAGGCGC CCGAAAACGG GATTGTCATG
GATTTGCGCA TCCACACGAC GGGCGGCGTT ATCGGGGCAG GCGAGCCGTT GCTGGATCTG
GTGCCGCAGG ATGGCAACAT GATCGTGTCA GCGCATGTTC GGCCCGAGGA TATCAACCTT
GTGCGTCCCG GCTTGAACGC TCAGGTGCAT CTTTTGCCCT ATGATCAGCG ACGCGTGCCT
CTTCTGGAAG GACAAGTGAC ATATGTTTCG GCCGACCGGC TTATCGATAA ACAGACCGGG
CAGCCCTATT ATGCCGCGAC GATCCGCGTG ACCGACGATG AACTGATGCA GGCCGGAGAC
GTGGAAATGA TCCCCGGAAT GCCTGTGCAG GCCCTGATAG AAACCGGGGA AAGCAGTGTC
GCACTTTATG CTGTCAGGCC ATTGCTGGAC AGTTTTCACC GGGCTTTCCG CGAAAACTGA
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| Protein sequence | MTLVPIELPA KVANALKYSL LLARLRAIQL KLPSLPLLLP GKNTLPTPLT SRPRLRGVAW
TGNLLVLIFV AGFGIWAVFA PLKSAAVAVG VVEAESSRKT IQHLEGGIVQ QIYVHNGDLV
SNGQILIKLD DTKPRTELVG IQGQLWDAQA SRARLVAEQA NEMQLLFPPE LEQLAPHNPA
VNAIVVGQRR IFEARRDVYR SEIAITHEKM GQVKEEITGL AAQKMALSSR IEITRQQLDM
INPLVKKGLE RKTSVLNLAR EKADLDGQLG ETIAQMSRAY QVINEAQANL VKLESDRQNE
IAKELRETEN QLFLLSERYR AINDQLIRTD IKAPENGIVM DLRIHTTGGV IGAGEPLLDL
VPQDGNMIVS AHVRPEDINL VRPGLNAQVH LLPYDQRRVP LLEGQVTYVS ADRLIDKQTG
QPYYAATIRV TDDELMQAGD VEMIPGMPVQ ALIETGESSV ALYAVRPLLD SFHRAFREN
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