Gene Oant_3948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOant_3948 
Symbol 
ID5381993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOchrobactrum anthropi ATCC 49188 
KingdomBacteria 
Replicon accessionNC_009668 
Strand
Start bp1362030 
End bp1362890 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content59% 
IMG OID640836634 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_001372482 
Protein GI153011268 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGACA CATCCTTGCA AGGCGATGCA GCTGACAGCT TCGATCCGCT GCGCCCGAAA 
CTGATCCGCG TTGCCTATCG CATGTTGGGT TCGGTCGCCG ATGCCGAGGA TATGGTGCAG
GAGGCGTTCA TCCGATGGAT GAACGCTGAT CGCAGCGAAG TGCGCGAGCC GGAGGCCTTT
CTGCGTCGCA CTGTTATCCG CCTGTGCCTT GATTTTCTGA AATCCGGTCG CAACCAGCGC
GAAACCTATT TCGGGCCGTG GATTCCCGAT CCGGTTGTCG AAGAGGAAGC GGATGACGAT
GTCACCCTTC CGCTCATGCT GGCGCTGGAG CGTCTTTCGC CATTGGAACG CGCCGCCTTT
CTGCTGCATG ATGTCTTCGG GCTGGATTTC GACGAGATAG CCAGGACAAT CCAGCGCGAT
GCCGCTGCCT GCCGCCAGCT TGCTGCACGG GCGCGCAAGC ATGTGCGCGA GGAGCGTCCG
CGTTTTCAGG TCGACAAGCA GCGCGGGCTC GAACTCGCGC AGGCCTTCTT CAATGCGTCG
CGCAGCGGCG ACATGAATGC GCTTGGTGCG ATGCTGGCAG CAGATGTCAA CCTTCAGGCC
GATGGTGGCG GCAAGCGCCC GGCTTTCCCG AAGCCTGTTT TCGGCTTCGA AGAGGTGATG
AAGACCCACG AGAAACTGGC GGGTTATTTC CGTGGCAACC AGTCCACGCT TTTGCGTACG
GTTTTCATCA ATGGTTTGCC CGGCATCATC ACGCGTGAAG CCGATGGCGA AATCCAGACG
ACAGCTCTCG ATATAGAAGA CGGCAAGATT GTCGGTATCT ATGTGGTGCG CAACCCAGAC
AAGCTAAAGC ATCTGCACTG A
 
Protein sequence
MADTSLQGDA ADSFDPLRPK LIRVAYRMLG SVADAEDMVQ EAFIRWMNAD RSEVREPEAF 
LRRTVIRLCL DFLKSGRNQR ETYFGPWIPD PVVEEEADDD VTLPLMLALE RLSPLERAAF
LLHDVFGLDF DEIARTIQRD AAACRQLAAR ARKHVREERP RFQVDKQRGL ELAQAFFNAS
RSGDMNALGA MLAADVNLQA DGGGKRPAFP KPVFGFEEVM KTHEKLAGYF RGNQSTLLRT
VFINGLPGII TREADGEIQT TALDIEDGKI VGIYVVRNPD KLKHLH