| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_1350 |
|---|
| Symbol | |
|---|
| ID | 5380523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ochrobactrum anthropi ATCC 49188 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009667 |
|---|
| Strand | - |
|---|
| Start bp | 1428600 |
|---|
| End bp | 1429787 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640834009 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001369896 |
|---|
| Protein GI | 153008681 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.80626 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAG CCGTCAATCC CGCCGATAAC CTTGCCGCCC TCATCCGTTG TGCATCCGTA
ACGCCTGCCG AGGGCGGTGC GCTGACGGCG CTGGAAGCGA TGTTGAAGCC GATGGGGTTT
TCGGTGGAAC GACCTGTCTT CCACGATGAA GACACGCCCG ACATCGAAAA CCTTTATGCA
CGCAAGTCGG GCAATGGCCC GCATCTGATG TTTGCGGGAC ATACCGATGT CGTGCCTCCC
GGCAATGAGG GCGACTGGAA ACACCCGCCC TTTTCTGCCG CTATTGAAGA CGGCGTGATG
TACGGTCGCG GTGCGGTTGA CATGAAGGGC GGTGTTGCCT GTTTCGTGGC CGCAGTTGCC
CGTCACATCG AAAAGCACGG CAGCATCAAG GGCAGCGTTT CGTTCCTCAT CACCGGCGAC
GAGGAAGGCC CGGCCATCAA TGGCACGGTC AAGCTTCTCG ACTGGGCGAA GCAGCGCGGC
GAAAGCTGGG ATGCATCCAT CGTCGGAGAG CCAAGCAACC CGAATGCGCT CGGCGATGCG
ATCAAGATCG GACGACGCGG CTCACTGTCC GGCACGATCA CCGTCCATGG CGTGCAGGGC
CATGCCGCCT ATCCGCATCT GGCCGAAAAC CCGGTACGCG GCATTACCAC GCTGGTCGAC
AGCCTGCTTT ATCCGGCTTT CGACCAAGGG ACAGCCAATT TTCAGGCCAG CAATCTGGAA
GTAACCAGCA TCGACGTCGG CAACAAGGCC ACCAATGTCA TTGCGAACAA GGCAACGGCC
TCGTTCAACA TCCGCTTCAA CGACACCTGG ACGGCAGAGA CCTTGCAGGC CGAAATCATC
GCGCGCCTCG AAAAAGCCGC CCGCGACAAT CGCTTGCGGC CGGGTCGCGA AACACCGATC
AAATACGAAC TCACCTGGCG CGAGCATCCG AGCCATGTGT TCCTGACCCG TGACGAAAAG
CTGATCGGCA CACTGACAGA TTCCGTCGAG GCCGTAACGG GCAAACGCCC GGAACTGTCG
ACATCAGGCG GCACGTCCGA TGCCCGTTTC ATCAAGGATT ACTGTCCGGT GGTCGAGTTC
GGCCTTGTCG GACAGACCAT GCATATGGTT GACGAGCGCG TAGCCCTTGC CGACCTCGAA
GGCCTGACAC AGATTTATGA ACGCTTCATC GCCGATTTCT TTGGGTAA
|
|---|
| Protein sequence | MSLAVNPADN LAALIRCASV TPAEGGALTA LEAMLKPMGF SVERPVFHDE DTPDIENLYA
RKSGNGPHLM FAGHTDVVPP GNEGDWKHPP FSAAIEDGVM YGRGAVDMKG GVACFVAAVA
RHIEKHGSIK GSVSFLITGD EEGPAINGTV KLLDWAKQRG ESWDASIVGE PSNPNALGDA
IKIGRRGSLS GTITVHGVQG HAAYPHLAEN PVRGITTLVD SLLYPAFDQG TANFQASNLE
VTSIDVGNKA TNVIANKATA SFNIRFNDTW TAETLQAEII ARLEKAARDN RLRPGRETPI
KYELTWREHP SHVFLTRDEK LIGTLTDSVE AVTGKRPELS TSGGTSDARF IKDYCPVVEF
GLVGQTMHMV DERVALADLE GLTQIYERFI ADFFG
|
|---|
| |