| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_1218 |
|---|
| Symbol | tolB |
|---|
| ID | 5379607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ochrobactrum anthropi ATCC 49188 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009667 |
|---|
| Strand | + |
|---|
| Start bp | 1287181 |
|---|
| End bp | 1288512 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640833867 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_001369764 |
|---|
| Protein GI | 153008549 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.27228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG GCATCATCAA TACAAAGATC CGGACGGTCT TTTCGGCTTT CGCGTGTATG
ATTGCCGCAA GCCTTGTCTG CACCATGCCG GCGCGCGCCG TCGTGGAAAT CAACATCAAC
AAGGGGGTGA TCGAACCGTT GCCGATCGCC ATCACCGATT TCCTTTCGGC TGATCAGCTC
GGGCCGAATA TCACGTCGGT CATCGCGGCC GATCTTGAGC GGTCTGGTCT TTTTGCACCG
ATCGACAAGG GCGCCTTCAT CGAGAAGATC TCCAATCCGG ACGCGGCTCC GCGTTTCGAG
GACTGGAAGG TCATCAATGC GCAGGCGCTT GTCACGGGCC GCATCACCAA ACAGCCGGAT
GGCCGTCTCA AGGCTGAGTT CCGCCTGTGG GATACGTTCG GTGGCCAGCA GATGATCGGC
CAGCAGTTCT TCACCACGCC GGACAACTGG CGCCGCGTCG CCCATATCAT CGCTGATGCG
ATCTACGAAC GCCTGACCGG TGAAAAGGGC TACTTCGATA CGCGTGTTGT TTTCGTCGAT
GAATCCGGCC CGGCACAGAA GCGCGTCAAG CGTCTTGCCA TCATGGATCA GGACGGCGCC
AATGTGCGTT ACATTTCCGA CGGTCGCGCC ATTTCGCTGA CGCCGCGTTT CTCGCCGAAC
CGTCAGGAAG TCACCTATAT GTCGTTCGAA GGCGGTTCGC CGAAGGTGTA TCTGCTGCAG
CTCGAAACCG GCCAGCGTGA ACTCGTCGGC AATTTCCCCG GCATGACCAT TGCTCCGCGT
TTCTCGCCCG ATGGCCAGAA GGTTGTGATG AGCCTGCTTC AGGACGACGG CAGCGCCAAT
ATCTATACGA TGGACCTGCG CAATCGTTCG ACCACGCGCC TGACCAACAG TCAGGCGATC
GATACGAGCG CGTCCTATTC ACCGGACGGA TCGCAGATTG TTTTCTCCTC CGACCGTGGT
GGACGTCCGC AGCTCTATGT CATGGGTGCT GATGGCTCCA ATCCGCGCCG TATCTCGGCC
GGTGACGGCA GCTATTCCAC GCCGGTTTGG TCTCCGCGCG GTGATCTCAT CGCCTTCACC
AAGCAGTCGC AGGGCCAGTT CTCCATTGGT GTGATGAAAA CTGACGGTTC GGGCGAACGC
CTGCTGACCT CGGGCTTCCA CAATGAAGGC CCGACCTGGG CTCCGAACGG TCGCGTGCTG
ATGTTCTTCC GCAAGGCGGC GGGTGCAGGC GGTCCGAAGC TCTTCACCAT CGACCTGACC
GGTCGCAACG AGCGCCAGAT CCAGACGCCG AACTTCGCAT CCGATCCGGC CTGGTCACCG
CTGCTCGAAT AG
|
|---|
| Protein sequence | MKIGIINTKI RTVFSAFACM IAASLVCTMP ARAVVEININ KGVIEPLPIA ITDFLSADQL
GPNITSVIAA DLERSGLFAP IDKGAFIEKI SNPDAAPRFE DWKVINAQAL VTGRITKQPD
GRLKAEFRLW DTFGGQQMIG QQFFTTPDNW RRVAHIIADA IYERLTGEKG YFDTRVVFVD
ESGPAQKRVK RLAIMDQDGA NVRYISDGRA ISLTPRFSPN RQEVTYMSFE GGSPKVYLLQ
LETGQRELVG NFPGMTIAPR FSPDGQKVVM SLLQDDGSAN IYTMDLRNRS TTRLTNSQAI
DTSASYSPDG SQIVFSSDRG GRPQLYVMGA DGSNPRRISA GDGSYSTPVW SPRGDLIAFT
KQSQGQFSIG VMKTDGSGER LLTSGFHNEG PTWAPNGRVL MFFRKAAGAG GPKLFTIDLT
GRNERQIQTP NFASDPAWSP LLE
|
|---|
| |