Gene Oant_0943 details

Gene Information

• Locus tag: Oant_0943
• Symbol: rimM
• ID: 5379750
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ochrobactrum anthropi ATCC 49188
• Kingdom: Bacteria
• Replicon accession: NC_009667
• Strand: +
• Start bp: 980482
• End bp: 981051
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640833588
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001369493
• Protein GI: 153008278
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCGTC CAGAAAACCC GATCCAGCTT GCCGTCATTG GTGCCGCCCA TGGCACGCGT 
GGCGAAGTGA GAGTAAAGAC CTTCACCGGC GATCCGCTGG CAATTGCCGA ATACGGCCTG 
CTCTATGACG AACAGGGCAA GAGTTACGAG GTTCTGGAAG CTCGTCCAGC AAAGACGGTC 
GTGGTCGTGC GCTTCAAGGG CATCAATGAC CGTAATGCCG CCGAAGCGCT GAACGGGACC 
GAACTTTTCA TTGATCGTTC GCAGCTGCCG GACGACGAAC TGGACGAAGA CGAGTTCTTC 
CAGACCGACC TGATCGGCTT GCTGGCGGTG GATGCCGAAG GCAAGACCTA TGGCGTGGTG 
AGCGCCCTGT TCGATTTCGG TGGCGGCGAC CTCATCGAGC TCAGCGAAAA GGGCAAGCGC 
CCGATGCTTA TTCCTTTCAC GGAGGCAGCC GTACCGGAAA TCGATCTGGA TAAGGGCACT 
TTGCTGGTCG AGCCCTATGC CGCTGGACTG ATCGCCGACG ATGAGGATGA ACGCCCGCAG 
AACGAAAAGA AAAAGCCGAA GAAGTCATGA 

 

Protein sequence

MPRPENPIQL AVIGAAHGTR GEVRVKTFTG DPLAIAEYGL LYDEQGKSYE VLEARPAKTV 
VVVRFKGIND RNAAEALNGT ELFIDRSQLP DDELDEDEFF QTDLIGLLAV DAEGKTYGVV 
SALFDFGGGD LIELSEKGKR PMLIPFTEAA VPEIDLDKGT LLVEPYAAGL IADDEDERPQ 
NEKKKPKKS