| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4361 |
|---|
| Symbol | |
|---|
| ID | 5369608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 5208113 |
|---|
| End bp | 5208883 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640832627 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_001368538 |
|---|
| Protein GI | 153002857 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.14783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC GAAACACACA GCAGCGTCGC CACAGCATAA TCACCATATT GAACGAACAG
GGTGAAGTGA GTGTTGATGA ACTGTCGTTA CGTTTTGAAA CCTCAGAAGT GACGATTCGC
AAAGATCTGG CTGCGCTTGA GAAAACGGGC CTGCTACTGC GCCGTTACGG TGGCGCTGTG
GCGATTCCTG ACGAAGTGAC CCAACAGTTT TCTGCCAAAA TCGCGCCTAA TAAGCTGTCT
ATTGCGAAAA CCGCCGCGCA GCTGATCAAA GATCACAATC GCATCATTAT CGATAGCGGC
ACTACGACTT CTGGCTTGAT TGAACAGCTG AACGATAAGC GTGGGCTGGT GGTCATGACG
AATGCATTGC ACCTTGCCAA TGCCATCCAT GAACTTGAAA ACGAGCCAAC CTTATTGATG
ACCGGTGGTA CTTGGGATCC GCATTCTGAA TCCTTTCAAG GTCAAGTCGC CGAGCAAGTG
TTGCGCTCAT ATAACTTCGA CCAACTGTTT ATCGGTGCCG ATGGTATTGA TCTTGAACGC
GGCACCACTA CCTTTAACGA GTTAACTGGT CTAAGCAAAG TCATGGCCGA AGTGTCCCGC
GAAGTGATCG TTATGGTGGA TTCAGACAAA ATCGGCAAGC GGATCCCTAA CTTAGAGTTA
CCGTGGGCTA AGGTGAGTGT GTTGGTCACC GACGATCGTA TCGACGAGAG CGCGCTAAAA
CAAATTTCAG ATCAGGGCGT GCGAGTCATG CTAGCGCCCT ACGCTCAATA G
|
|---|
| Protein sequence | MNKRNTQQRR HSIITILNEQ GEVSVDELSL RFETSEVTIR KDLAALEKTG LLLRRYGGAV
AIPDEVTQQF SAKIAPNKLS IAKTAAQLIK DHNRIIIDSG TTTSGLIEQL NDKRGLVVMT
NALHLANAIH ELENEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLER
GTTTFNELTG LSKVMAEVSR EVIVMVDSDK IGKRIPNLEL PWAKVSVLVT DDRIDESALK
QISDQGVRVM LAPYAQ
|
|---|
| |