| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4341 |
|---|
| Symbol | tdh |
|---|
| ID | 5370015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 5177049 |
|---|
| End bp | 5178074 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640832604 |
|---|
| Product | L-threonine 3-dehydrogenase |
|---|
| Protein accession | YP_001368518 |
|---|
| Protein GI | 153002837 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.183698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TAAGCAAGTT AAAAGCCGAA AAAGGTATTT GGTTAGTCGA TGCGCCTAAG
CCAGTAATGG GCCACAACGA TCTGCTAATC AAAATTAAAA AAACGGCGAT TTGTGGCACC
GACATGCACA TCTACAACTG GGACGAATGG TCGCAAAAAA CCATTCCCGT TCCTATGGTT
GTTGGCCACG AATATGTGGG CGAAGTGGTT GATATCGGCC AAGAAGTGCG TGGTTTTAAG
ATTGGCGACC GCGTGTCTGG CGAAGGCCAT ATCACCTGCG GCCACTGCCG TAACTGCCGC
GCTGGCCGCA CCCATTTATG CCGTAACACC TCTGGCGTGG GTGTCAATCG TGAAGGTTCA
TTTGCGGAAT ACTTAGTTAT CCCCGCCTTT AACGCCTTTA AAATCCCTGA TGATATCAGC
GATGATTTAG CCTCAATCTT TGACCCCTTT GGTAACGCTG TGCACACAGC ATTATCCTTC
GATTTAGTCG GTGAAGACGT GTTGATCACA GGCGCAGGTC CCATCGGCAT AATGGCGGCT
GCAGTATGTC GTCACGTAGG TGCTCGCCAT GTGGTGATCA CTGACGTCAA CGAATACCGC
TTAGAGCTGG CCCGTAAAAT GGGCGCCACG CGCGCTGTGA ACGTGTCAAA AGAAAACCTA
AAAGACGTGA TGAAAGAACT GGGCATGACC GAAGGTTTCG ACGTTGGATT AGAAATGTCT
GGCGTACCCT CAGCCTTCCA CGCCATGTTA GATACCATGA ACCACGGCGG CAAAGTCGCT
ATGCTCGGTA TTCCAAGTGG TGAAATGGCC ATCGACTGGA GCAAAGTGAT CTTCAAAGGT
TTGGTCATTA AAGGCATCTA CGGCCGTGAA ATGTTCGAAA CTTGGTACAA GATGGCCAGT
CTTATCCAAT CAGGCTTAGA TATTTCACCT ATCATCACTC ACCACTTCAA GATTGATGAT
TTCCAACAAG GTTTCGACGC TATGGGCTCG GGCCAATCGG GTAAAGTGAT CCTCAGCTGG
GATTAA
|
|---|
| Protein sequence | MKALSKLKAE KGIWLVDAPK PVMGHNDLLI KIKKTAICGT DMHIYNWDEW SQKTIPVPMV
VGHEYVGEVV DIGQEVRGFK IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGS
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELARKMGAT RAVNVSKENL KDVMKELGMT EGFDVGLEMS
GVPSAFHAML DTMNHGGKVA MLGIPSGEMA IDWSKVIFKG LVIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHFKIDD FQQGFDAMGS GQSGKVILSW D
|
|---|
| |