Gene Shew185_4216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4216 
Symbol 
ID5373445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp5026742 
End bp5030389 
Gene Length3648 bp 
Protein Length1215 aa 
Translation table11 
GC content49% 
IMG OID640832481 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) 
Protein accessionYP_001368395 
Protein GI153002714 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGCCAGC TTGAAGGACT ACACATAAAG TCATTTATTC CATACCTTAA GGTAAATATT 
TTCATCGCCT TAGCTTACAT AATTGTAGGT AAATTAGGCT TGATGATTGC TTTGCCGCCT
GGATATTCTG CGGCGATTTG GCCTGCCGCA GGGATTGCTA TTGCCGCATG TATCCTATGG
AAAGAGTATG TCCCTTGGGT TGGCGTGTTT ATTGGTTCGC TGCTGATTAA CATCAATATT
GGCGGGCATA TCCATTGGGG CTGGTTACCC TTTGCTATCT CGATTGGGTC TTGCATACAG
GCTGTGCTTT CTGCCCATGT TCTTGGGCGA GTCGATCATT TATTCACCTT AGATAATCCT
AATACCGTTA TTAAATCCTG CTTGAGCTTA GCCTTAACTT GTATTGTGGC GACCGTTTTT
GGCAACAGTG CCTTAGTGAT CAACGGTACG ATTCCACCAT CTGATTTATT GGGGAGTTTA
GTGAATTGGT GGACGGGGGA TTTGCTCGGC GCCGTGATCT TTATTCCTTT GACTATGTTG
TTATTTGATA AGCGAGCTAT CTGGCGTGCT CGCCGCATTC AGACGGGTGT TCCCCTGCTG
GTGGGCTTTT TATTCTGCGT GGGGATTTAT TACTACTCGG ATATGAACCA GCGCCAACAG
TTGCAGGATA AGTTTCAGAT CCAATCCAAT GCAGTGATTA GCAATATTGA AAGTTTTCAA
GAGGCTAACC TGCAGCAAAT CATCGCCTTA GCGAGCTTGT TCGATAATAG CGATCAGGTG
TCTGAGGATG AGTTTGTGCA GTTTGGCAAA CGTAACATGC TGCAGCAAGA TGGCTTTAGA
GCTTGGTCTT GGTCGCCGTT AGTGGCGGCC GCCGATCTAC CCAGTTTTGA GGCATCGACC
CGCTCAGCTA TTGGCGCTCC CTACAAAGTC ACGCGGCCTC AAGGCTGGCA AGCTAATGCC
GATGGCTGGT TAGTGCCAGT GATGTATATT CAGCCACTCA TAGGTAATGA AGCGGCATTG
GGATTAGATC TCAATAGTGA ACCAATACGA GCCGCTGCCA TTGCTAAAGT GCGCGCGACC
CTAGCGCCTG TGATGACGGC GAAGATCCAA TTAGCACAAG ATCCCAATGG CCCAGGTGGC
ACCTTACTTC TAGCGCCCTC GTTCGATCGG CTGGGTAAAA TCTCAGGATT TTGTTCAGCT
GTGATTGATT TGCAAAGCAT TATTAATGAT GTTGAGAGCG TAAAGGGATT GCAGTGGAAA
CTCTCCGACA TGAGTGCGGG CGGTGCATTG CTTTACAGCA ATACCCAGAA GTCATTTCCC
GCATTTAGCA GCAAGCTATT TAGCGATAAA ACCGGCCAGT ATTTTCAAGC AAACCTGCTG
CTTGCAGATC GGCATTGGCA CATAGTGATT TATCAATCCT ATGCAGTGCT GATGGGCGAT
ACTTTTAGCT TATCGCTACT TATGCTGCTC CTCGCCTTTA TCACCTGTGC TGTTGTGGGT
GGTATGACGC TGGTTTCCTC CGGCGAGCGC CAACGTATTG CCGAGAAAGT GACTGAAAAA
ACCATGGCCT TATCGAAGGA AATTGCCCGT CGTCAAGCTT TTCAGGCCAC TTTGGTACAA
AGCGAACAAA GATATCGTAA CTTGTTTGAT AAGGCGCCCG TGGGGCATGT GCTCAAACGT
TTAGATGATG GTCAGTTTGT GGCGATTAAC CCCGCATTCG AAGCCATGAC GGGTTACTCA
CTCGATGAGT TAAATCAGCT TGACCCTTGG GATCTCACGC CAAAGCGTTA TCAATTAAGT
GAAACTGAGC AATTAGAACG CCTAAAGCAA ACCCGTCGTT ATGGCCCCTA TCAGAAGCAT
TATGTTCATA AGAACGGCCA GTTAGTGGCA GTGCGCCTCA ACGGTGCGTT AGTCACAGGC
GCCGATGGTG AGCAGCTTAT TCTCTTTATC GTTGAAGATA TTACCGAGCA GGAGCGCACC
GTTGCGCGGG TAAATCTATT GGCGCAGGTG TTCCAGCAGA GTGGTGAAGG CATCACTATC
ATGGATGCCA ACGACATTAT TGTGGATGTG AATAGTGCGT TTTCTCAGAT AACCGGTTAT
TCCCGAGAAG AAATCATTGG TAAAAACTGT CGCTTTTTAG AGGCCGAGCG TACCGACAAA
GGTATCGATC CTCAAGTGCG TGCTGCCCTA GAACAAACGG GTTTCTGGCA AGGCGAAGTT
TGGGACAGGC ATAAGCATGG TTACGATTTC CCTAAATGGT TGATGATGTC TGTGGTGCGC
GATGACGCAG GTGCGGTGAG CCATTACATC GGCAGCTTTA CCGATATCAG CGAGCGTAAA
GTCAGTGAGG AACGGATCCA TTTCCTCGCC CACCATGATT CTTTGACGCT ACTGCCTAAT
CGACTCAGCT TGCAGTCGCG CCTCGAAGTG GTATTCAGGG AGGCGCTGGC ATCCGACAGC
CAAATTGCGG TGATGTTTAT CGACATGGAC CACTTTAAAA ATATCAACGA CACCTTGGGC
CATCATGTGG GCGATCAACT GTTGTTAGAA GTTGCGCGTC GTTTGAAAAA CATCGTTGGT
GATACTGACA CTGTGGCGCG TCTGGGTGGC GATGAGTTTG TGGTCGCATT ATCTGATACG
AACCATGATG AGGTGGCCAG TTTAGCCGAA GCGCTGCGCA GTGGTTTGAG TCAAACCTAT
ATCATTAATA ATCAAGCATT ACATTCATCG CCAAGTATAG GCATCAGTTT ATTCCCGACC
GATGGTGACA GTGTTGAAGC CCTAATGAAA AACGCCGATA TGGCCATGTA CCGCGCCAAA
TCGGCGGGGC GTAATAACTA TCAATTCTTT ACTGCGGCGA TGAATACCTT GATCACTGAG
CGCCAGCAAA TTGAAACTGG CCTCAGGCAA GTGCTCGCTA ACGATGAATT GCGGCTGCAT
TATCAGCCAC AAATTGATAT CCGTACTGGG CAAGTGGTCA GTGTTGAAGC CTTAGTGCGC
TGGCAACATC CCGAATTTGG CATGGTAGCG CCAGACCGCT TTATCCCCAT TGCCGAAGAG
ATTGACATGA TCATTCCTAT CGGCCAATGG GTGTTAGAAA CCGCCATGGC GCAGCTTGCC
GCTTGGCGCG CTGCGGGTGC GACCGAGCTG CGAATGGCGG TGAATCTGTC GGCGCATCAA
CTCCGCAAAG ATAGCATTGT CGCCGATATC ACCAATGTGC TTTTAAAGCA TAAGTTAGGC
AAAGGTGCAT TGGAGCTCGA AATCACCGAG AGTGTGGCAA TGCAATATCC GGAGCAGAAT
GCGCGCCTGT TAGCGGAATT GCGCCAGCAT GGTATCGAAC TTGCGATTGA TGATTTCGGT
ACGGGTTATT CCTCGTTATC CTATTTGAAA CTCTTGCCCT TAGACAGATT GAAGCTCGAC
CGCTCTTTTG TGAAGGATAT TGAGAGCGAC CCGAACGATG CTGCTATCAG TGCTGCGACC
ATTTCTATGT CCCATGAGTT GGGGCTAACT GTGGTGGCTG AAGGGGTTGA AAACGAGGCG
CAGTTGGTAT TATTGTCGAG CATGGGGTGC GACTTAGTGC AAGGGTTTTA CTTTAGTAAA
CCCTTAGCGG CAGAAGAGTG TGTCCGCTTT ATCCAGCGTA ATTTATAA
 
Protein sequence
MCQLEGLHIK SFIPYLKVNI FIALAYIIVG KLGLMIALPP GYSAAIWPAA GIAIAACILW 
KEYVPWVGVF IGSLLININI GGHIHWGWLP FAISIGSCIQ AVLSAHVLGR VDHLFTLDNP
NTVIKSCLSL ALTCIVATVF GNSALVINGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML
LFDKRAIWRA RRIQTGVPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ
EANLQQIIAL ASLFDNSDQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST
RSAIGAPYKV TRPQGWQANA DGWLVPVMYI QPLIGNEAAL GLDLNSEPIR AAAIAKVRAT
LAPVMTAKIQ LAQDPNGPGG TLLLAPSFDR LGKISGFCSA VIDLQSIIND VESVKGLQWK
LSDMSAGGAL LYSNTQKSFP AFSSKLFSDK TGQYFQANLL LADRHWHIVI YQSYAVLMGD
TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ
SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS
ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT
VARVNLLAQV FQQSGEGITI MDANDIIVDV NSAFSQITGY SREEIIGKNC RFLEAERTDK
GIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK
VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG
HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY
IINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE
RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE
IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG
KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD
RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK
PLAAEECVRF IQRNL