Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4216 |
Symbol | |
ID | 5373445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 5026742 |
End bp | 5030389 |
Gene Length | 3648 bp |
Protein Length | 1215 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640832481 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
Protein accession | YP_001368395 |
Protein GI | 153002714 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGCCAGC TTGAAGGACT ACACATAAAG TCATTTATTC CATACCTTAA GGTAAATATT TTCATCGCCT TAGCTTACAT AATTGTAGGT AAATTAGGCT TGATGATTGC TTTGCCGCCT GGATATTCTG CGGCGATTTG GCCTGCCGCA GGGATTGCTA TTGCCGCATG TATCCTATGG AAAGAGTATG TCCCTTGGGT TGGCGTGTTT ATTGGTTCGC TGCTGATTAA CATCAATATT GGCGGGCATA TCCATTGGGG CTGGTTACCC TTTGCTATCT CGATTGGGTC TTGCATACAG GCTGTGCTTT CTGCCCATGT TCTTGGGCGA GTCGATCATT TATTCACCTT AGATAATCCT AATACCGTTA TTAAATCCTG CTTGAGCTTA GCCTTAACTT GTATTGTGGC GACCGTTTTT GGCAACAGTG CCTTAGTGAT CAACGGTACG ATTCCACCAT CTGATTTATT GGGGAGTTTA GTGAATTGGT GGACGGGGGA TTTGCTCGGC GCCGTGATCT TTATTCCTTT GACTATGTTG TTATTTGATA AGCGAGCTAT CTGGCGTGCT CGCCGCATTC AGACGGGTGT TCCCCTGCTG GTGGGCTTTT TATTCTGCGT GGGGATTTAT TACTACTCGG ATATGAACCA GCGCCAACAG TTGCAGGATA AGTTTCAGAT CCAATCCAAT GCAGTGATTA GCAATATTGA AAGTTTTCAA GAGGCTAACC TGCAGCAAAT CATCGCCTTA GCGAGCTTGT TCGATAATAG CGATCAGGTG TCTGAGGATG AGTTTGTGCA GTTTGGCAAA CGTAACATGC TGCAGCAAGA TGGCTTTAGA GCTTGGTCTT GGTCGCCGTT AGTGGCGGCC GCCGATCTAC CCAGTTTTGA GGCATCGACC CGCTCAGCTA TTGGCGCTCC CTACAAAGTC ACGCGGCCTC AAGGCTGGCA AGCTAATGCC GATGGCTGGT TAGTGCCAGT GATGTATATT CAGCCACTCA TAGGTAATGA AGCGGCATTG GGATTAGATC TCAATAGTGA ACCAATACGA GCCGCTGCCA TTGCTAAAGT GCGCGCGACC CTAGCGCCTG TGATGACGGC GAAGATCCAA TTAGCACAAG ATCCCAATGG CCCAGGTGGC ACCTTACTTC TAGCGCCCTC GTTCGATCGG CTGGGTAAAA TCTCAGGATT TTGTTCAGCT GTGATTGATT TGCAAAGCAT TATTAATGAT GTTGAGAGCG TAAAGGGATT GCAGTGGAAA CTCTCCGACA TGAGTGCGGG CGGTGCATTG CTTTACAGCA ATACCCAGAA GTCATTTCCC GCATTTAGCA GCAAGCTATT TAGCGATAAA ACCGGCCAGT ATTTTCAAGC AAACCTGCTG CTTGCAGATC GGCATTGGCA CATAGTGATT TATCAATCCT ATGCAGTGCT GATGGGCGAT ACTTTTAGCT TATCGCTACT TATGCTGCTC CTCGCCTTTA TCACCTGTGC TGTTGTGGGT GGTATGACGC TGGTTTCCTC CGGCGAGCGC CAACGTATTG CCGAGAAAGT GACTGAAAAA ACCATGGCCT TATCGAAGGA AATTGCCCGT CGTCAAGCTT TTCAGGCCAC TTTGGTACAA AGCGAACAAA GATATCGTAA CTTGTTTGAT AAGGCGCCCG TGGGGCATGT GCTCAAACGT TTAGATGATG GTCAGTTTGT GGCGATTAAC CCCGCATTCG AAGCCATGAC GGGTTACTCA CTCGATGAGT TAAATCAGCT TGACCCTTGG GATCTCACGC CAAAGCGTTA TCAATTAAGT GAAACTGAGC AATTAGAACG CCTAAAGCAA ACCCGTCGTT ATGGCCCCTA TCAGAAGCAT TATGTTCATA AGAACGGCCA GTTAGTGGCA GTGCGCCTCA ACGGTGCGTT AGTCACAGGC GCCGATGGTG AGCAGCTTAT TCTCTTTATC GTTGAAGATA TTACCGAGCA GGAGCGCACC GTTGCGCGGG TAAATCTATT GGCGCAGGTG TTCCAGCAGA GTGGTGAAGG CATCACTATC ATGGATGCCA ACGACATTAT TGTGGATGTG AATAGTGCGT TTTCTCAGAT AACCGGTTAT TCCCGAGAAG AAATCATTGG TAAAAACTGT CGCTTTTTAG AGGCCGAGCG TACCGACAAA GGTATCGATC CTCAAGTGCG TGCTGCCCTA GAACAAACGG GTTTCTGGCA AGGCGAAGTT TGGGACAGGC ATAAGCATGG TTACGATTTC CCTAAATGGT TGATGATGTC TGTGGTGCGC GATGACGCAG GTGCGGTGAG CCATTACATC GGCAGCTTTA CCGATATCAG CGAGCGTAAA GTCAGTGAGG AACGGATCCA TTTCCTCGCC CACCATGATT CTTTGACGCT ACTGCCTAAT CGACTCAGCT TGCAGTCGCG CCTCGAAGTG GTATTCAGGG AGGCGCTGGC ATCCGACAGC CAAATTGCGG TGATGTTTAT CGACATGGAC CACTTTAAAA ATATCAACGA CACCTTGGGC CATCATGTGG GCGATCAACT GTTGTTAGAA GTTGCGCGTC GTTTGAAAAA CATCGTTGGT GATACTGACA CTGTGGCGCG TCTGGGTGGC GATGAGTTTG TGGTCGCATT ATCTGATACG AACCATGATG AGGTGGCCAG TTTAGCCGAA GCGCTGCGCA GTGGTTTGAG TCAAACCTAT ATCATTAATA ATCAAGCATT ACATTCATCG CCAAGTATAG GCATCAGTTT ATTCCCGACC GATGGTGACA GTGTTGAAGC CCTAATGAAA AACGCCGATA TGGCCATGTA CCGCGCCAAA TCGGCGGGGC GTAATAACTA TCAATTCTTT ACTGCGGCGA TGAATACCTT GATCACTGAG CGCCAGCAAA TTGAAACTGG CCTCAGGCAA GTGCTCGCTA ACGATGAATT GCGGCTGCAT TATCAGCCAC AAATTGATAT CCGTACTGGG CAAGTGGTCA GTGTTGAAGC CTTAGTGCGC TGGCAACATC CCGAATTTGG CATGGTAGCG CCAGACCGCT TTATCCCCAT TGCCGAAGAG ATTGACATGA TCATTCCTAT CGGCCAATGG GTGTTAGAAA CCGCCATGGC GCAGCTTGCC GCTTGGCGCG CTGCGGGTGC GACCGAGCTG CGAATGGCGG TGAATCTGTC GGCGCATCAA CTCCGCAAAG ATAGCATTGT CGCCGATATC ACCAATGTGC TTTTAAAGCA TAAGTTAGGC AAAGGTGCAT TGGAGCTCGA AATCACCGAG AGTGTGGCAA TGCAATATCC GGAGCAGAAT GCGCGCCTGT TAGCGGAATT GCGCCAGCAT GGTATCGAAC TTGCGATTGA TGATTTCGGT ACGGGTTATT CCTCGTTATC CTATTTGAAA CTCTTGCCCT TAGACAGATT GAAGCTCGAC CGCTCTTTTG TGAAGGATAT TGAGAGCGAC CCGAACGATG CTGCTATCAG TGCTGCGACC ATTTCTATGT CCCATGAGTT GGGGCTAACT GTGGTGGCTG AAGGGGTTGA AAACGAGGCG CAGTTGGTAT TATTGTCGAG CATGGGGTGC GACTTAGTGC AAGGGTTTTA CTTTAGTAAA CCCTTAGCGG CAGAAGAGTG TGTCCGCTTT ATCCAGCGTA ATTTATAA
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Protein sequence | MCQLEGLHIK SFIPYLKVNI FIALAYIIVG KLGLMIALPP GYSAAIWPAA GIAIAACILW KEYVPWVGVF IGSLLININI GGHIHWGWLP FAISIGSCIQ AVLSAHVLGR VDHLFTLDNP NTVIKSCLSL ALTCIVATVF GNSALVINGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML LFDKRAIWRA RRIQTGVPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ EANLQQIIAL ASLFDNSDQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST RSAIGAPYKV TRPQGWQANA DGWLVPVMYI QPLIGNEAAL GLDLNSEPIR AAAIAKVRAT LAPVMTAKIQ LAQDPNGPGG TLLLAPSFDR LGKISGFCSA VIDLQSIIND VESVKGLQWK LSDMSAGGAL LYSNTQKSFP AFSSKLFSDK TGQYFQANLL LADRHWHIVI YQSYAVLMGD TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT VARVNLLAQV FQQSGEGITI MDANDIIVDV NSAFSQITGY SREEIIGKNC RFLEAERTDK GIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY IINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK PLAAEECVRF IQRNL
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