Gene Shew185_4178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4178 
Symbol 
ID5371292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4982780 
End bp4983400 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content47% 
IMG OID640832443 
ProductLexA repressor 
Protein accessionYP_001368357 
Protein GI153002676 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACCTT TGACGCCACG CCAAGCTGAA ATTTTAGAGC TAATTAAACG AAATATTGCC 
GATACTGGCA TGCCACCCAC TCGGGCAGAA ATTGCGACCC GTTTAGGTTT TAAGAGCGCC
AATGCGGCTG AAGAGCATCT TAAAGCGTTG GCGAAAAAGG GCTGCATTGA GATCATGCCA
GGCACATCGC GGGGCATTCG TCTGACTGCG GAAGTCGAAG AAGTAACTGA AACAGGTTTA
CCGCTTATCG GTCAAGTAGC CGCTGGCGAA CCTATTCTCG CCCAAGAACA TGTTGAACAG
TACTACCAAG TCGACCCAAG CATGTTTCAT CCCGCCGCCG ATTTTTTACT GCGGGTTAAA
GGCGACAGCA TGAAGAATAT CGGCATTCTC GAAGGAGATT TGCTGGCAGT TCATAAAGTA
CAACAAGCTA GAAATGGTCA AGTGGTTGTC GCTAGAGTCG ACGACGATGT CACTGTTAAA
CGTTTCGAAA AAAAAGGTAA TGTGGTCTAT CTACACGCCG AAAATGAAGA CTATTCCCCG
ATTAAAGTGG ATTTAGGCTA TCAAAGTTTA ACAATTGAAG GACTCGCCGT CGGTGTGATC
CGTAATGGAG ATTGGCTATG A
 
Protein sequence
MRPLTPRQAE ILELIKRNIA DTGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP 
GTSRGIRLTA EVEEVTETGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PAADFLLRVK
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNVVY LHAENEDYSP
IKVDLGYQSL TIEGLAVGVI RNGDWL