| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4143 |
|---|
| Symbol | |
|---|
| ID | 5372954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4944520 |
|---|
| End bp | 4945995 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640832409 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001368323 |
|---|
| Protein GI | 153002642 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGACGA AAACGGTCAT TAAGGATAGT GAGTTTATCC AAGATTTTTC GGCCTCCTTG
AGTGATGACT ACCTCAAGGC AAAAAGCTAT GTGCAGGATG TGCCGACTCA GTCGCTACTG
CACATTCGCA GTTTTACCCA TAAGCTCACC GAGTTACTGG GGCAAGATAA GCACATAGTG
TTTTCGAGTC CGAATCTATA CGATAGGATC GAGCAACTAA ACCAGCAGCG CGTTATCGAT
GTTAAGACGA CTCGCGCGCT GCATCGATTG CGGGCCGACG GTAACCGCGG CGCTCATCCT
GAAAAATATC ACCTGACTCA AGCGCAATTG CTCGCGCTGG CGCAAAAATC TATTAAAGAT
GTTTTGGCGC TAGTCGAACA CTTGTATCCC AAGGTTAAAG GCCAAGTCGC ACCTGATTAT
CGTTATGAAG CGTCTGATGC CATGACCGCG AAGGATTTAT GCTACCGCGC TGTGATGGAA
GATGACGCCG AAGCCCAGTA TCTAGTGGGA ATATCCTTTA AGACCAAGGC CCTGATACTG
AAAGAGCAAG AGCTGCAACA AGATCAAGAG TTTGCCAATT CAGCTGAAGC TACTTCTAAT
CCAGAATCTT CTGGCGTTTC ACCTCTTACT TCCCACATTA GCGCCGCTGA CAGTTTTGCC
CGTGCCGCCT ATTGGTTTGC CCTTGCGGCG CCTCGGCATA TGGAAGCGTT ACATGAGCAC
GGTGTGGCCT TGATCCACGG TTATCAAGGT GTGCCAGAGG TGGCGAAAGG TGAGCAGCTG
ATTGCGACGG CGGCCGAGGC GGGTGTCGTT AATGCAATGG CGTTATTGGG ATATTTTTAT
CTTGTCGGCA GTGAGTCGTT TCAACCCGAT AGCAAGTTGG CACTGCAATA CTTACAACGC
GCCGCTGAGG GTGAGCAAAC CGAAGCAATG GCAAATTTAG GTGTGCTGTA TTATCAGCAA
AAAAATCTAA CTCAAGCCTA TCATTTTATT AGCAAAGCCG CACAAGCGGG TTATCCCCAC
GCCCAGTATC ATTTGGCATT AATGCTCGCC AACGGTGACG GTTGTACTCG AGATATGATT
GCCAGCGAGT ATTGGATGGC TGAAGCTGCC GAGCAAGGGC AACTCGATGC CATGCTGACG
CGGGCGCAGC ATATGCTCAA TGACGATAAT GCCTTTGGTA GTGATTTGAC TCAGGCTGAG
GATTATCTGC GCCAAGTGAT CAAATATGGT CACAGTGTGC CTGCGATGAT CGAGCTGAGT
ATGGCACTGG CCGACGGTAT GTTAGGGCGA ATTGATGTTG TGGGAGCCGC TGCTTTGCTG
AAGTTGGCGC GCCAACATGC CAATAAAAAA GAGGCCGAGA TTATCGAGCC TCTTTGGCGT
TCTCTTGCAT TACAAATTAA AAATGTACTT AAAGTAACTC AAGATCCCGC AGAAATTCAT
AGCCTTAATC GCGCACAGAC ATTACTCGTC ATTTGA
|
|---|
| Protein sequence | MGTKTVIKDS EFIQDFSASL SDDYLKAKSY VQDVPTQSLL HIRSFTHKLT ELLGQDKHIV
FSSPNLYDRI EQLNQQRVID VKTTRALHRL RADGNRGAHP EKYHLTQAQL LALAQKSIKD
VLALVEHLYP KVKGQVAPDY RYEASDAMTA KDLCYRAVME DDAEAQYLVG ISFKTKALIL
KEQELQQDQE FANSAEATSN PESSGVSPLT SHISAADSFA RAAYWFALAA PRHMEALHEH
GVALIHGYQG VPEVAKGEQL IATAAEAGVV NAMALLGYFY LVGSESFQPD SKLALQYLQR
AAEGEQTEAM ANLGVLYYQQ KNLTQAYHFI SKAAQAGYPH AQYHLALMLA NGDGCTRDMI
ASEYWMAEAA EQGQLDAMLT RAQHMLNDDN AFGSDLTQAE DYLRQVIKYG HSVPAMIELS
MALADGMLGR IDVVGAAALL KLARQHANKK EAEIIEPLWR SLALQIKNVL KVTQDPAEIH
SLNRAQTLLV I
|
|---|
| |