| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4136 |
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| Symbol | |
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| ID | 5373732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 4936021 |
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| End bp | 4938141 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640832402 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001368316 |
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| Protein GI | 153002635 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGAT GGCAACACTT ACTTAAAAAA CTCAGTACAG ATGATCCAGT ACTGCAAGAA
AAGCTGTCGC TCTGGCAAGC ACATCCGCAC AAAACTCCCT TGGCCTTAAT TCAAGGCTTT
AGCTTTATTA GCGCCAACCA AGCGACCCTC GGTTATTTTG AGACTGAGTA CGACGCCTTT
GTGAATGCGA CTCCCTATGA TTTTTCGCCA AGAATTCAAT CTTCCGGCCG CAATAGTGTT
GAATATGCGA GGGAAATGAT CCTCGAAGCC ATTGCGGGTA ATAATGTTGA ATTCAACTGG
CTACACCTGA GTCAAGTCGG CAATGAACTG CCAACTCGAG TGTACCTCTA TCGCTGCTAT
CTTCAGCAAC AACCCGTTGT GCTCGTGGAA CTTCAAGCTC TCAATCGTCG CAATCAAATG
CGTGAAACCA TTTCCGATGG TTTTGCCCAT ATTCCCAAAG AGATTTTGTC GACGACACTC
GAAGAAAGTG CCGAAGCTGT GTATATCACA GACACGGATG ATCAGATTTT GGCCGTTAAT
AAAGCTATGT GCCGTATTTG CGGTTATAGC GCCGAGCAGC TTATTAGTAA AACCCCTGAA
TTTTTAGAGC TGAAAAGCCA TCATTTAGGG GAAGAAACCG AGTGCCAAAT TGCACTGAAG
CAAAGGGGCT TTTGGCAGGG TGAAACGTGG AAAAGACGTT CAGATGGTAG TAATTTCCCT
GCTTGGCAAA GTAGTCGAAA AATCATTACC GAAGATGGCG CTCACTATAA TGTGAATATT
TTCAGTGACA TTAGTACAAA AAAATTATTA GAAACTCAGC TGACGACCCG TGCTATGTAC
GATACCTTGA CTGGATTGCC AAACCGGTTC CACCTTAAGC AGATCCTCAA TAGTGCCCTA
GAAAAACTTA AAACCGATCC CTTAGCATTA GGTGCGCTGA TGTTTTTAGA TCTCAATGGG
TTTAAAAATA TCAATGACAG CTTCGGCCAC TCCATGGGCG ATCGGGTGTT ACAACTCGTC
GCCGCCAGAC TCGAAGCCGG TTGCATCGAA AAAGCCGACA TAGCCCGCAT GGGTGGAGAT
GAGTTTACCT TAGTACTGCA AGACTGCAGC TGCAAAGATG AAATCCAACT GTTTGCAGAG
CAGATACTTA GTCTATTTGA GAGCCCCTTT GAAATTGAAG GGCAAAAGTT TTTCCTCGGC
ACGAGTATCG GCATTGCGCT ATTTCCGACC CACAGCGATA AAGCGGGACA ACTGATTAGC
CTTGCAGATA CAGCCATGTA TTGTGCTAAA AAGAGCTTAC CGCACCTCGT GTTTTACGAT
AAGGCTATGA GCCAAGCAGC AGAATTAAAG CTGCAGTTAA TCAATAGCCT AAGACATGCG
CACAGCTTAA AACAATTCAC TCTCGCCTAT CAGGCCATAG TGGATTTACA CACAAATCAA
ACGATAGCTG CTGAAGCCCT ACTGCGCTGG CAAAAATCAC CTACCGAGTA TTATGACGCC
GCCGATTTTG TTCCATTGCT GGAAGAGACA GGGTTAATTG TCAGTATTGG TCAATGGGTA
TTGGAACAGG CTTGCGTGCA AGCGGCACAA TGGCGGGCAC ATAATCAGGC GGACTTTAGA
ATTTCAGTCA ATGTGTCGCC ACTGCAATTG GAACACTTAG ATTTTATCGA CCAAGTGATT
AATGCCTTGG AAATGGCTAA TTTACCTGCT GAGGCACTGA TTTTAGAAAT CACCGAATCG
GCACTGCTAC GCCAACCTGA GCAAGCACGA CTCACACTCA ATCGCATCAA AGCCTTAGGT
GTCAGCATTG CCATTGATGA TTTTGGGACT GGGTTATCTT CACTCAGTCG CTTAGGCACT
TTGCCCATAG ACAGTGTAAA AATTGATGCC GAGTTTGCCC TACGTTTAAA CGAAGTGTCA
GGACAAAAGC TCTGTAATGC CATAGTGCAA CTCGCGCAGG CACTCGATAT TCACTTCGTC
GCCGAAGGCA TAGAGACTCA ACAACAAAGA GACATAATGA CAGACATGGG CCAAGGTTTT
GCCCAAGGAT TTCTTTTTGG CTACCCGAGT TCAGTCGATA ACTTCACCCA AACCTTTCTT
ACGGAAAAAC ATATAGCTTA A
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| Protein sequence | MIRWQHLLKK LSTDDPVLQE KLSLWQAHPH KTPLALIQGF SFISANQATL GYFETEYDAF
VNATPYDFSP RIQSSGRNSV EYAREMILEA IAGNNVEFNW LHLSQVGNEL PTRVYLYRCY
LQQQPVVLVE LQALNRRNQM RETISDGFAH IPKEILSTTL EESAEAVYIT DTDDQILAVN
KAMCRICGYS AEQLISKTPE FLELKSHHLG EETECQIALK QRGFWQGETW KRRSDGSNFP
AWQSSRKIIT EDGAHYNVNI FSDISTKKLL ETQLTTRAMY DTLTGLPNRF HLKQILNSAL
EKLKTDPLAL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLVLQDCS CKDEIQLFAE QILSLFESPF EIEGQKFFLG TSIGIALFPT HSDKAGQLIS
LADTAMYCAK KSLPHLVFYD KAMSQAAELK LQLINSLRHA HSLKQFTLAY QAIVDLHTNQ
TIAAEALLRW QKSPTEYYDA ADFVPLLEET GLIVSIGQWV LEQACVQAAQ WRAHNQADFR
ISVNVSPLQL EHLDFIDQVI NALEMANLPA EALILEITES ALLRQPEQAR LTLNRIKALG
VSIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLNEVS GQKLCNAIVQ LAQALDIHFV
AEGIETQQQR DIMTDMGQGF AQGFLFGYPS SVDNFTQTFL TEKHIA
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