| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4089 |
|---|
| Symbol | |
|---|
| ID | 5372474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4869676 |
|---|
| End bp | 4870755 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640832352 |
|---|
| Product | type IV pilus assembly protein PilM |
|---|
| Protein accession | YP_001368269 |
|---|
| Protein GI | 153002588 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCAA ATTTATGGAA GCGTCAGGCT CCGCAGATGG TGGGAATTGA CATAGGTTCC
CATGAAGTTA AGGCCATTTT GTTGAGCAAG ACTGCTGATG GATACAAGAT ATTGAGTCAT
GCGGCGGTAC CCATTAAAAA GGGGGCCGTT AACGATCATG ATATTCGTGA TGCAGATGCC
GTTGTCGAAT GCCTTAGGCA AATAAAACGC AATTTACCTA AATCGGTTAA ATATGCGGCG
GTTTGTGTTT CAGGCTCTGC TGTGATGACC AAAGTGATCT ACATGGATGC TTCGCTGAGC
GAGGAAGAAA TGGAGGCGCA GATAGAAATT GAAGCCGACA ACCTTATTCC GTATTCACTC
GATGAAGTCA GCATAGATTT TGAAACCCTC AGCGTAAATA GTACAGATCC AACCAAGGTA
GATGTGTTGT TGAGCGCATG CCGTACTGAC AACATTGATG TCAGAGTCGA TGCGCTCGAT
AGCGTAGAGC TTGAGGCCAA AGTTGTTGAT GTCGAGGGTT ATGCTTTAGG CCGCGCCGCC
GAATTGATTC TGGCACAACT ACCCGAAGGG GCGAAACATA AGGCCGTCGC TATGGTTGAT
ATCGGCGCGA ATATGACCAC TTTCTCTGTA GTTGAAGCGG GTGAGACGAC TTTTATTCGC
GAGCAAGCCT TCGGTGGTGA GCAATTTACT CAGTCAATTT TATCTTTCTA TGGCATGTCC
TACGATCAAG CTGAGAAAGC AAAAGTTGAA GGCGACCTAC CACGAAATTA TATGTTTGAA
GTCTTGTCAC CTTTCCAAAC TCAGCTATTA CAACAAATAA AACGTACGCT ACAAATCTAT
TGTACTTCGA GCGGTAAAGA TAAAGTCGAC TATCTCGTAT TATGTGGTGG GACATCTAAA
TTAGAAGGTA TGGTTAATTT ACTGACGAAT GAATTGGGTG TTCACACTAT CATCGCTGAT
CCTTTTCAAG GGTGTTTGCA TGCCGATGAG TCGGTTAAAA GTGCGCTGCA ACCCACAATC
AGCAAATATA TGGTTGCTTG TGGCTTAGCA TTGAGGAGTT ACGGTCAATG GCGAACATAA
|
|---|
| Protein sequence | MLSNLWKRQA PQMVGIDIGS HEVKAILLSK TADGYKILSH AAVPIKKGAV NDHDIRDADA
VVECLRQIKR NLPKSVKYAA VCVSGSAVMT KVIYMDASLS EEEMEAQIEI EADNLIPYSL
DEVSIDFETL SVNSTDPTKV DVLLSACRTD NIDVRVDALD SVELEAKVVD VEGYALGRAA
ELILAQLPEG AKHKAVAMVD IGANMTTFSV VEAGETTFIR EQAFGGEQFT QSILSFYGMS
YDQAEKAKVE GDLPRNYMFE VLSPFQTQLL QQIKRTLQIY CTSSGKDKVD YLVLCGGTSK
LEGMVNLLTN ELGVHTIIAD PFQGCLHADE SVKSALQPTI SKYMVACGLA LRSYGQWRT
|
|---|
| |