Gene Shew185_4087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4087 
Symbol 
ID5372477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand- 
Start bp4868484 
End bp4869107 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content42% 
IMG OID640832350 
Productpilus assembly protein PilO 
Protein accessionYP_001368267 
Protein GI153002586 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTCG ATCTAAGTCA GTTTAATGAT ATCGACTTTG AAAATATTGG TGGTTGGCCT 
AACCAAGTTA AAAGTTTTTT CGCGATCCTA TTAGCACTTT GTGTTTTTGC TGCGGGTTAT 
TTCTTAGTCG TTTCAGATTC GGTTGATACT TATACCGCAG AGCAAGATAG GGAATTACAA 
CTCAGAGATG ACTTTAAGAA TAAGTATCAA CTTGCCGCAA ATTTAAAACT CTATCGTGAG 
CAGCTAGCAA CGATGGAAGT GCAATTCGCC GAGTTACTGA AGATGCTACC CTCTGAGAAT 
GAAATGCCTG GTTTGCTAGA CGATTTAACC TTCGTCGCGA CTGATGCAGG ACTTCGAATA 
AAGAGCTTAG ATTGGGAGCC GGAAATTCAG CGGGATTTCT ATATTGAGTT TCCCATCAAA 
ATGTCCGTGA CGGGCGATTA TCATCAGCTA GGTAATATGG TGAGTGGCGT AGCAAAACTG 
CCACGTATTG TCAGCCTTCA TGATTTTACC ATTAAGCGCG ATGATGCTGG CAACTTAGCA 
ATGGACATTT TAGCCAAGAC CTATCGCTTT AAAGAGGGGG CTGAATTACC GCCTGAAAAG 
CCTGCTAAGA AGGGGAAGAA ATAA
 
Protein sequence
MKLDLSQFND IDFENIGGWP NQVKSFFAIL LALCVFAAGY FLVVSDSVDT YTAEQDRELQ 
LRDDFKNKYQ LAANLKLYRE QLATMEVQFA ELLKMLPSEN EMPGLLDDLT FVATDAGLRI 
KSLDWEPEIQ RDFYIEFPIK MSVTGDYHQL GNMVSGVAKL PRIVSLHDFT IKRDDAGNLA 
MDILAKTYRF KEGAELPPEK PAKKGKK