Gene Shew185_4076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4076 
Symbol 
ID5372776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4859240 
End bp4859917 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content48% 
IMG OID640832340 
Productphosphoglycolate phosphatase 
Protein accessionYP_001368257 
Protein GI153002576 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGGATA AGATTAAAGC GATAGCGTTT GATCTTGATG GCACGCTGAT CGACAGTGTG 
CCTGACCTAA CCGTTGCCAC GCAGCAAGCC TTAGCCGAGT TAGGTTTGAA GAGCTGCTCT
GAGGCGCAAG TGCGTACTTG GGTCGGTAAC GGTGCCGAAA TGTTAATGCG CCGCGCCATG
ACCCATGCCT TGGGAGCGGA TGTTGAGCAA ACCGCACTGG ATGCGGCCAT GCCGATCTTT
ATGCATCACT ATCAAGAGAA TCTTGAAAAA CACAGTGCGC TGTATAGTGA CGTGCATCAA
GTACTGCAAA CCTTGTTCGA TGCAGGTTTT AAGCTCGCCG TTGTCACCAA TAAACCCTAT
CGTTTTACCT TGCCATTACT CAATGCCTTT GGGATTAATG ACTTTTTCAG CTTAGTGTTA
GGTGGCGATA CCCTAGCTAA GATGAAGCCC GATCCTTTGC CGCTGCAGCA CTTATTACAT
GAGTGGCAAT TGGATAAAGA GGCGTTATTG ATGGTCGGCG ACTCTAAAAA CGACATTTTA
GCGGCGAAAG CGGCTGGGAT AGCGTCAATC GGCTTGACCT ACGGCTACAA CTACGGTGAA
GATATTGGGC TCAGTGGCCC AGATGCCGTA TGTGAGCAAT TTAGTGAGAT TTTGAACTGG
GTAAAACATA CCAAGTAA
 
Protein sequence
MWDKIKAIAF DLDGTLIDSV PDLTVATQQA LAELGLKSCS EAQVRTWVGN GAEMLMRRAM 
THALGADVEQ TALDAAMPIF MHHYQENLEK HSALYSDVHQ VLQTLFDAGF KLAVVTNKPY
RFTLPLLNAF GINDFFSLVL GGDTLAKMKP DPLPLQHLLH EWQLDKEALL MVGDSKNDIL
AAKAAGIASI GLTYGYNYGE DIGLSGPDAV CEQFSEILNW VKHTK