Gene Shew185_4026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4026 
Symbol 
ID5369498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4807747 
End bp4812273 
Gene Length4527 bp 
Protein Length1508 aa 
Translation table11 
GC content47% 
IMG OID640832291 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001368209 
Protein GI153002528 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGTAGGGG AAAATTTGAG TCAACTAATC CACAAGCTAG TGCTAGGCGC GCTTTGTATC 
CTAAGTTTGT GGGGGATCTC GTGCAATGGA TTAGCGCAAC CATTGAGCGC GGCTTTCACA
CAGCTTAAAT TTGAACATAT TCGCAGTGAA GATGGTCTCA ACCAGAATAC GATTACCAGC
CTGTTTATGG ACAGTGCTGG CATGTTGTGG ATTGGTACTC AAGATGGTTT GCATGCCTAC
AACGGTCATA ACTTCACCAT TTTTACCCAC TCTCCCAACG ATCCTAGCAG TATTTCAGAA
AGTTATGTCT CTGACATTAT TCAAGATTCA GAAGGCTATA TTTGGGTTTC CACATTCAGC
CAAGGGGTCA ATCGACTCGA TTTGAGTACA GGGACCTTTG AGCACTTTGG CCAAGAACAA
GGTCTGACCG ATCCCCGCAC CACCAAACTC AGCATAGTGG GTAATACACT CTGGATTGGT
ACTAAAGCAG GACTATTTTC CCTATCGACC AAAACCAAAC GCATTACCCA AGTGAGTTTA
GGTAATAGCG TCGAGCCCTA TATCACTAGC TTAGCCAATG TTGAAAACAC TTACCTGCTG
GCAGGTACCC AAGATAGCGG CACCTTTGCC GTCAGTGCAA ATACCATCAC TCGCTTAAAC
GTGCCGCAAA ATGTTACTGC CTATCAAATT AAAGCGAACT CAGCCTACTC GATCACCTTA
GCCCTAGGTG GACAACTATG GCACTACAAC TTGGCCTCGC AGCAGGGCGA AATCCTCTGG
CAGACTGACG ATAACGTGCC TTACATTAAG GATTTTATCC AAACCGAACA GGGTGATTTT
TGGATCGTCG GGCCTGAAGC GGGTCTCATT CAACTCGAGA GAAACGATAA AACATTCACT
GCGACCTATC ATAGGTATGA TTCTAAGCGC ACCAACAGTA TCAGTGAAAA TAACATACTG
AGTGTACTAC AAGATCCCTT TGGCAACTTA TGGCTAGGCG CCAGTTATTC GGGATTAGAT
AAAATTAATA CCCGTCGCCA GTATTTTCAG CATATTTTCG AATACACCGC AGAGCTGTCG
CAACAGAGCA ACAATATTCG CACCTTATTC CGCAGCAAAG ATGATGCCCT CTGGATAGGC
ACTGAAGGCG CAGGGCTTAA GCGCATGTTA GCTAACGGTA AATATGAGCA CTATACGGAG
CGATTTGCTA ACGCCTTAGG GGTGCATCAA CGCAATTTAA ACCTCACCCT GCGAGATATT
GCCCAAGACA AAGCGGGCGT GCTCTGGTTT GCCACTAACT ATGGACTTGG TCGGCTATCG
CCAGAGGGAG ATTTCCAATT ACTCAAGGTC TCAGCAAGTA CAGACCAAGG CTCTGAAGCC
AATTACATCC GAAGTTTAGA AATTGATGAT CAAGGCCATC TCTGGGTCGC AACGACCCAC
GCCCTCTATC GCAAGGCTAT CGATACCGAT GAATTTACTT TTATCTCATT GGCACATATT
GATAATTTCC ATCCGGCACA AAACCAGTTT TTAATCCTAA GAGCGCACAA AGATACGCTT
TGGATAGGCA CACTCGATGG CCTGCTGAAA CTGGATATGA AAACGGGCAT AGGTAAATCT
TACTTCCACC AATCCTCAGA TAAAAAAAGT CTAATTAACA ACCGTGTCCG CGATATTTTG
GTGACTCAGG CGGGTGAGGT GTGGTTCGCC ACCCATGGCG GGATCAGTAA GTTACCCTCA
CAAGATGCCG ATGCAGGCTT TACTCATTAC ACCCGCGAGC AGGGATTACC AAGCGATACT
ATTTACGCCT TACTTGAGGA CCAAGAACAT AATATTTGGT TTAGCAGCAA TGCCGGCATA
GGCAAACTTG ACCCTAAAAC CAATCGCGTC ATCATATTCA ACGAACAGGA AGGATTGCAG
GCACTGGAGT TTAACGGCGG CGTAAAACTC CAGGACAGCG ATGGTGATCT TTGGTTTGGT
GGCATTAATG GCATCAATCG TTTCAATCCA GAGTCGATTC CAGATCAACG ACCCGATGTT
AAAGTCGCGC TCACTGGCTA TAGCATTGCG GGAAAAGGCC ATACGATTCT CGATTTAAGC
CGCCCCCCTA GCATAGTGAT GGACTATAGC GATCAGCTAA TCAGTTTTGA GGTGACCTCA
TTGGATTTCA GCTACACGGG TAGAAACCGT TTCAGCTATT ATCTCGAAGG GTTTGATAAC
AGATGGCATG AGCTACCCAC AGGCAATGAA ATCACCTTCA CTAACATCAA TCCTGGCCAT
TACCGATTAC ATGTTCGTCA TGGGCTGCAA TACAACTCAG AAGGTGCCTA CGCGCTGCTT
GTCGATCTGA ATGTACAAGC CCCCTTCTAT CGCACTCAAT TCGCCTACGT CCTTTATTTC
TTACTCACTT TAGGACTGCT GGCTTGGGTC ATTCTCTGGC GTAAAAAGAA ACATCAAATA
CAACGTGAAT TTGAAACCAG CATTCGCGCC TCAGAGGAGC GGCTAAAACT GGCACTTTGG
GCGTCTGGCG ATGGCATGTG GGACTGGAAC ATACCCGAAA ACCAAGTCTA TCGTACCAAT
ATGGACTCTT CGATTCCCCA TTGGAACAGC AGCAATATTG TCCATGAGAG CATGCACTCT
GAAGACAGAG AGAGATTCAA ACTTGAGCTA AACGAGCACC TTCAAGGCCG CTCGCCTTTC
TTCGAAGCCG AGTACCGTGT CGAACGCTCA CCGGGTAATT GGGTGTGGAT TTTAGACCGT
GGCAAAGTGG TTGAAAAAGA TAGCCTAGAT AACCCAATCC GCATGACAGG GACTAACCGT
AATATTACCT CTCGTAAGCT GATTGAGAAC GAGCTGGTAT TGTCCTCGCA AGTGCTCAAC
AGTATGAATG AAGCGGTTGT CGTTGCGGGC CTAGACTATC GCATTCGCTC GGTTAACCCT
GCCTTTTGTG CCATTACTGG CTACACAGAG CGCCAAATCA CCGACAGGCA TTTCATTCAT
TTAGCCTTTG GGCGCCAACA GCGTGAATTG TTCAATACAA TTGAACAACA GCTACTGCGC
CATAAACATT GGGTCGGGGA ACTGTGGATC CGCAATAAAC AACGGCAGGC GATTTTAGTC
TGGCTTGAGA TCAACCAAGT TATCGATATT AAAGGTGAAA CCAGTCACTT CGTCGCGGTA
TTTACCGATA TCACACAGCG GAAAAAAGCC GAAGAAGATC TGCGTTTCCT CGCCAGTTTC
GACACCTTAA CGGGCCTGCC TAACCGGACC TTATTCCAAG ACAGGCTCAA TCACGCGATT
ACCCAAGCGC ATAGGGCGAA CAATATCGTC GCTTTACTGT TTTTAGATCT CGACCGCTTT
AAACATATCA ACGACTCCAT GGGGCACCAT GTCGGCGATT TACTGCTCAA AGCAGTCGCC
AGAAGACTGC AAAATGCGGT GCGCGATGGC GATACTGTCG CACGCCTAGG CGGTGATGAA
TTTACCATTA TTTTAGAAGG GGTGGCGAAA ACAAAAGCCG CTACTTTGAT CTCAGAAAAA
GTGCTCAGAG CATTCCAAAC GCCCTTCTTA TTGGACGATA AAACGCTAAC CATTTCGACC
TCCATCGGCA TCAGTCTCTA TCCAAACGAT GCTGATAATG CCGACTCGCT GATTAAATTT
GCCGATACTG CCATGTACCA CGCGAAATCC TCAGGTAGAA ATAACTTCCA GTTTTATACT
TCTAAGTTAA ATGAAATTGC CACTCGCCAT GTGCAACTCG AAAGTGGGTT AAAAGAGGCG
ATTCAGCGCA ACGAGTTGAG CTTAGTTTAT CAGCCTAAGT TCTGTTTAAA AGATGGCTCG
CTGACTGGGA TAGAAGCGCT TTTACGTTGG CATCACACTG AACTTGGCCC CATTTCCCCC
GTCGAGTTTA TTCCGCTGGC GGAAGAAACC GGCATCATCA CCCAAATTGG CCATTGGGTG
ATCAATCAAG CTTGCCAGCA ATTAGCCGAA TGGAACAGCT TAGGATTCAA CGGTATCACT
GTCGCCGTTA ACCTATCGGC TCGCCAACTT AAGGCCGATA TTATCTCCAC TATAGAAGTT
GCCTTAGCGG TTTCAGGTCT CCCGGCACAA TCCCTTGAGC TTGAACTGAC AGAGTCGATG
ATCATGGGCA ATCCGCAGGA GTCAGTCAGT ATTCTATCTA AACTAAAGGC CCTAGGCTTG
ACCATAGCGG TGGATGATTT TGGGACGGGT TATTCGAGCC TAAGTTATCT CAAACGCTTC
CCGATAGACA CGCTGAAAAT CGATCGAGAG TTCGTCAGAG ACATCACCAA TGATCCTGAC
GATGCGGCCA TCACCAGCGC CATTATTGCC CTCGCTCACA GCTTAGACCT GAACGTTGTC
GCCGAAGGCG TAGAGACCCA AGAACAGCTC AACTTCTTGG CGATGCAGGG TTGCGATCAA
GTACAAGGTT TCTTACTCAG TAAACCCTTA AGTGCCGCGG ATTTTTTAAC TTTACTCAAG
AATCAATCTA AGCCACAGCC GATTTGA
 
Protein sequence
MVGENLSQLI HKLVLGALCI LSLWGISCNG LAQPLSAAFT QLKFEHIRSE DGLNQNTITS 
LFMDSAGMLW IGTQDGLHAY NGHNFTIFTH SPNDPSSISE SYVSDIIQDS EGYIWVSTFS
QGVNRLDLST GTFEHFGQEQ GLTDPRTTKL SIVGNTLWIG TKAGLFSLST KTKRITQVSL
GNSVEPYITS LANVENTYLL AGTQDSGTFA VSANTITRLN VPQNVTAYQI KANSAYSITL
ALGGQLWHYN LASQQGEILW QTDDNVPYIK DFIQTEQGDF WIVGPEAGLI QLERNDKTFT
ATYHRYDSKR TNSISENNIL SVLQDPFGNL WLGASYSGLD KINTRRQYFQ HIFEYTAELS
QQSNNIRTLF RSKDDALWIG TEGAGLKRML ANGKYEHYTE RFANALGVHQ RNLNLTLRDI
AQDKAGVLWF ATNYGLGRLS PEGDFQLLKV SASTDQGSEA NYIRSLEIDD QGHLWVATTH
ALYRKAIDTD EFTFISLAHI DNFHPAQNQF LILRAHKDTL WIGTLDGLLK LDMKTGIGKS
YFHQSSDKKS LINNRVRDIL VTQAGEVWFA THGGISKLPS QDADAGFTHY TREQGLPSDT
IYALLEDQEH NIWFSSNAGI GKLDPKTNRV IIFNEQEGLQ ALEFNGGVKL QDSDGDLWFG
GINGINRFNP ESIPDQRPDV KVALTGYSIA GKGHTILDLS RPPSIVMDYS DQLISFEVTS
LDFSYTGRNR FSYYLEGFDN RWHELPTGNE ITFTNINPGH YRLHVRHGLQ YNSEGAYALL
VDLNVQAPFY RTQFAYVLYF LLTLGLLAWV ILWRKKKHQI QREFETSIRA SEERLKLALW
ASGDGMWDWN IPENQVYRTN MDSSIPHWNS SNIVHESMHS EDRERFKLEL NEHLQGRSPF
FEAEYRVERS PGNWVWILDR GKVVEKDSLD NPIRMTGTNR NITSRKLIEN ELVLSSQVLN
SMNEAVVVAG LDYRIRSVNP AFCAITGYTE RQITDRHFIH LAFGRQQREL FNTIEQQLLR
HKHWVGELWI RNKQRQAILV WLEINQVIDI KGETSHFVAV FTDITQRKKA EEDLRFLASF
DTLTGLPNRT LFQDRLNHAI TQAHRANNIV ALLFLDLDRF KHINDSMGHH VGDLLLKAVA
RRLQNAVRDG DTVARLGGDE FTIILEGVAK TKAATLISEK VLRAFQTPFL LDDKTLTIST
SIGISLYPND ADNADSLIKF ADTAMYHAKS SGRNNFQFYT SKLNEIATRH VQLESGLKEA
IQRNELSLVY QPKFCLKDGS LTGIEALLRW HHTELGPISP VEFIPLAEET GIITQIGHWV
INQACQQLAE WNSLGFNGIT VAVNLSARQL KADIISTIEV ALAVSGLPAQ SLELELTESM
IMGNPQESVS ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD
DAAITSAIIA LAHSLDLNVV AEGVETQEQL NFLAMQGCDQ VQGFLLSKPL SAADFLTLLK
NQSKPQPI