Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4026 |
Symbol | |
ID | 5369498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4807747 |
End bp | 4812273 |
Gene Length | 4527 bp |
Protein Length | 1508 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640832291 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001368209 |
Protein GI | 153002528 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGTAGGGG AAAATTTGAG TCAACTAATC CACAAGCTAG TGCTAGGCGC GCTTTGTATC CTAAGTTTGT GGGGGATCTC GTGCAATGGA TTAGCGCAAC CATTGAGCGC GGCTTTCACA CAGCTTAAAT TTGAACATAT TCGCAGTGAA GATGGTCTCA ACCAGAATAC GATTACCAGC CTGTTTATGG ACAGTGCTGG CATGTTGTGG ATTGGTACTC AAGATGGTTT GCATGCCTAC AACGGTCATA ACTTCACCAT TTTTACCCAC TCTCCCAACG ATCCTAGCAG TATTTCAGAA AGTTATGTCT CTGACATTAT TCAAGATTCA GAAGGCTATA TTTGGGTTTC CACATTCAGC CAAGGGGTCA ATCGACTCGA TTTGAGTACA GGGACCTTTG AGCACTTTGG CCAAGAACAA GGTCTGACCG ATCCCCGCAC CACCAAACTC AGCATAGTGG GTAATACACT CTGGATTGGT ACTAAAGCAG GACTATTTTC CCTATCGACC AAAACCAAAC GCATTACCCA AGTGAGTTTA GGTAATAGCG TCGAGCCCTA TATCACTAGC TTAGCCAATG TTGAAAACAC TTACCTGCTG GCAGGTACCC AAGATAGCGG CACCTTTGCC GTCAGTGCAA ATACCATCAC TCGCTTAAAC GTGCCGCAAA ATGTTACTGC CTATCAAATT AAAGCGAACT CAGCCTACTC GATCACCTTA GCCCTAGGTG GACAACTATG GCACTACAAC TTGGCCTCGC AGCAGGGCGA AATCCTCTGG CAGACTGACG ATAACGTGCC TTACATTAAG GATTTTATCC AAACCGAACA GGGTGATTTT TGGATCGTCG GGCCTGAAGC GGGTCTCATT CAACTCGAGA GAAACGATAA AACATTCACT GCGACCTATC ATAGGTATGA TTCTAAGCGC ACCAACAGTA TCAGTGAAAA TAACATACTG AGTGTACTAC AAGATCCCTT TGGCAACTTA TGGCTAGGCG CCAGTTATTC GGGATTAGAT AAAATTAATA CCCGTCGCCA GTATTTTCAG CATATTTTCG AATACACCGC AGAGCTGTCG CAACAGAGCA ACAATATTCG CACCTTATTC CGCAGCAAAG ATGATGCCCT CTGGATAGGC ACTGAAGGCG CAGGGCTTAA GCGCATGTTA GCTAACGGTA AATATGAGCA CTATACGGAG CGATTTGCTA ACGCCTTAGG GGTGCATCAA CGCAATTTAA ACCTCACCCT GCGAGATATT GCCCAAGACA AAGCGGGCGT GCTCTGGTTT GCCACTAACT ATGGACTTGG TCGGCTATCG CCAGAGGGAG ATTTCCAATT ACTCAAGGTC TCAGCAAGTA CAGACCAAGG CTCTGAAGCC AATTACATCC GAAGTTTAGA AATTGATGAT CAAGGCCATC TCTGGGTCGC AACGACCCAC GCCCTCTATC GCAAGGCTAT CGATACCGAT GAATTTACTT TTATCTCATT GGCACATATT GATAATTTCC ATCCGGCACA AAACCAGTTT TTAATCCTAA GAGCGCACAA AGATACGCTT TGGATAGGCA CACTCGATGG CCTGCTGAAA CTGGATATGA AAACGGGCAT AGGTAAATCT TACTTCCACC AATCCTCAGA TAAAAAAAGT CTAATTAACA ACCGTGTCCG CGATATTTTG GTGACTCAGG CGGGTGAGGT GTGGTTCGCC ACCCATGGCG GGATCAGTAA GTTACCCTCA CAAGATGCCG ATGCAGGCTT TACTCATTAC ACCCGCGAGC AGGGATTACC AAGCGATACT ATTTACGCCT TACTTGAGGA CCAAGAACAT AATATTTGGT TTAGCAGCAA TGCCGGCATA GGCAAACTTG ACCCTAAAAC CAATCGCGTC ATCATATTCA ACGAACAGGA AGGATTGCAG GCACTGGAGT TTAACGGCGG CGTAAAACTC CAGGACAGCG ATGGTGATCT TTGGTTTGGT GGCATTAATG GCATCAATCG TTTCAATCCA GAGTCGATTC CAGATCAACG ACCCGATGTT AAAGTCGCGC TCACTGGCTA TAGCATTGCG GGAAAAGGCC ATACGATTCT CGATTTAAGC CGCCCCCCTA GCATAGTGAT GGACTATAGC GATCAGCTAA TCAGTTTTGA GGTGACCTCA TTGGATTTCA GCTACACGGG TAGAAACCGT TTCAGCTATT ATCTCGAAGG GTTTGATAAC AGATGGCATG AGCTACCCAC AGGCAATGAA ATCACCTTCA CTAACATCAA TCCTGGCCAT TACCGATTAC ATGTTCGTCA TGGGCTGCAA TACAACTCAG AAGGTGCCTA CGCGCTGCTT GTCGATCTGA ATGTACAAGC CCCCTTCTAT CGCACTCAAT TCGCCTACGT CCTTTATTTC TTACTCACTT TAGGACTGCT GGCTTGGGTC ATTCTCTGGC GTAAAAAGAA ACATCAAATA CAACGTGAAT TTGAAACCAG CATTCGCGCC TCAGAGGAGC GGCTAAAACT GGCACTTTGG GCGTCTGGCG ATGGCATGTG GGACTGGAAC ATACCCGAAA ACCAAGTCTA TCGTACCAAT ATGGACTCTT CGATTCCCCA TTGGAACAGC AGCAATATTG TCCATGAGAG CATGCACTCT GAAGACAGAG AGAGATTCAA ACTTGAGCTA AACGAGCACC TTCAAGGCCG CTCGCCTTTC TTCGAAGCCG AGTACCGTGT CGAACGCTCA CCGGGTAATT GGGTGTGGAT TTTAGACCGT GGCAAAGTGG TTGAAAAAGA TAGCCTAGAT AACCCAATCC GCATGACAGG GACTAACCGT AATATTACCT CTCGTAAGCT GATTGAGAAC GAGCTGGTAT TGTCCTCGCA AGTGCTCAAC AGTATGAATG AAGCGGTTGT CGTTGCGGGC CTAGACTATC GCATTCGCTC GGTTAACCCT GCCTTTTGTG CCATTACTGG CTACACAGAG CGCCAAATCA CCGACAGGCA TTTCATTCAT TTAGCCTTTG GGCGCCAACA GCGTGAATTG TTCAATACAA TTGAACAACA GCTACTGCGC CATAAACATT GGGTCGGGGA ACTGTGGATC CGCAATAAAC AACGGCAGGC GATTTTAGTC TGGCTTGAGA TCAACCAAGT TATCGATATT AAAGGTGAAA CCAGTCACTT CGTCGCGGTA TTTACCGATA TCACACAGCG GAAAAAAGCC GAAGAAGATC TGCGTTTCCT CGCCAGTTTC GACACCTTAA CGGGCCTGCC TAACCGGACC TTATTCCAAG ACAGGCTCAA TCACGCGATT ACCCAAGCGC ATAGGGCGAA CAATATCGTC GCTTTACTGT TTTTAGATCT CGACCGCTTT AAACATATCA ACGACTCCAT GGGGCACCAT GTCGGCGATT TACTGCTCAA AGCAGTCGCC AGAAGACTGC AAAATGCGGT GCGCGATGGC GATACTGTCG CACGCCTAGG CGGTGATGAA TTTACCATTA TTTTAGAAGG GGTGGCGAAA ACAAAAGCCG CTACTTTGAT CTCAGAAAAA GTGCTCAGAG CATTCCAAAC GCCCTTCTTA TTGGACGATA AAACGCTAAC CATTTCGACC TCCATCGGCA TCAGTCTCTA TCCAAACGAT GCTGATAATG CCGACTCGCT GATTAAATTT GCCGATACTG CCATGTACCA CGCGAAATCC TCAGGTAGAA ATAACTTCCA GTTTTATACT TCTAAGTTAA ATGAAATTGC CACTCGCCAT GTGCAACTCG AAAGTGGGTT AAAAGAGGCG ATTCAGCGCA ACGAGTTGAG CTTAGTTTAT CAGCCTAAGT TCTGTTTAAA AGATGGCTCG CTGACTGGGA TAGAAGCGCT TTTACGTTGG CATCACACTG AACTTGGCCC CATTTCCCCC GTCGAGTTTA TTCCGCTGGC GGAAGAAACC GGCATCATCA CCCAAATTGG CCATTGGGTG ATCAATCAAG CTTGCCAGCA ATTAGCCGAA TGGAACAGCT TAGGATTCAA CGGTATCACT GTCGCCGTTA ACCTATCGGC TCGCCAACTT AAGGCCGATA TTATCTCCAC TATAGAAGTT GCCTTAGCGG TTTCAGGTCT CCCGGCACAA TCCCTTGAGC TTGAACTGAC AGAGTCGATG ATCATGGGCA ATCCGCAGGA GTCAGTCAGT ATTCTATCTA AACTAAAGGC CCTAGGCTTG ACCATAGCGG TGGATGATTT TGGGACGGGT TATTCGAGCC TAAGTTATCT CAAACGCTTC CCGATAGACA CGCTGAAAAT CGATCGAGAG TTCGTCAGAG ACATCACCAA TGATCCTGAC GATGCGGCCA TCACCAGCGC CATTATTGCC CTCGCTCACA GCTTAGACCT GAACGTTGTC GCCGAAGGCG TAGAGACCCA AGAACAGCTC AACTTCTTGG CGATGCAGGG TTGCGATCAA GTACAAGGTT TCTTACTCAG TAAACCCTTA AGTGCCGCGG ATTTTTTAAC TTTACTCAAG AATCAATCTA AGCCACAGCC GATTTGA
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Protein sequence | MVGENLSQLI HKLVLGALCI LSLWGISCNG LAQPLSAAFT QLKFEHIRSE DGLNQNTITS LFMDSAGMLW IGTQDGLHAY NGHNFTIFTH SPNDPSSISE SYVSDIIQDS EGYIWVSTFS QGVNRLDLST GTFEHFGQEQ GLTDPRTTKL SIVGNTLWIG TKAGLFSLST KTKRITQVSL GNSVEPYITS LANVENTYLL AGTQDSGTFA VSANTITRLN VPQNVTAYQI KANSAYSITL ALGGQLWHYN LASQQGEILW QTDDNVPYIK DFIQTEQGDF WIVGPEAGLI QLERNDKTFT ATYHRYDSKR TNSISENNIL SVLQDPFGNL WLGASYSGLD KINTRRQYFQ HIFEYTAELS QQSNNIRTLF RSKDDALWIG TEGAGLKRML ANGKYEHYTE RFANALGVHQ RNLNLTLRDI AQDKAGVLWF ATNYGLGRLS PEGDFQLLKV SASTDQGSEA NYIRSLEIDD QGHLWVATTH ALYRKAIDTD EFTFISLAHI DNFHPAQNQF LILRAHKDTL WIGTLDGLLK LDMKTGIGKS YFHQSSDKKS LINNRVRDIL VTQAGEVWFA THGGISKLPS QDADAGFTHY TREQGLPSDT IYALLEDQEH NIWFSSNAGI GKLDPKTNRV IIFNEQEGLQ ALEFNGGVKL QDSDGDLWFG GINGINRFNP ESIPDQRPDV KVALTGYSIA GKGHTILDLS RPPSIVMDYS DQLISFEVTS LDFSYTGRNR FSYYLEGFDN RWHELPTGNE ITFTNINPGH YRLHVRHGLQ YNSEGAYALL VDLNVQAPFY RTQFAYVLYF LLTLGLLAWV ILWRKKKHQI QREFETSIRA SEERLKLALW ASGDGMWDWN IPENQVYRTN MDSSIPHWNS SNIVHESMHS EDRERFKLEL NEHLQGRSPF FEAEYRVERS PGNWVWILDR GKVVEKDSLD NPIRMTGTNR NITSRKLIEN ELVLSSQVLN SMNEAVVVAG LDYRIRSVNP AFCAITGYTE RQITDRHFIH LAFGRQQREL FNTIEQQLLR HKHWVGELWI RNKQRQAILV WLEINQVIDI KGETSHFVAV FTDITQRKKA EEDLRFLASF DTLTGLPNRT LFQDRLNHAI TQAHRANNIV ALLFLDLDRF KHINDSMGHH VGDLLLKAVA RRLQNAVRDG DTVARLGGDE FTIILEGVAK TKAATLISEK VLRAFQTPFL LDDKTLTIST SIGISLYPND ADNADSLIKF ADTAMYHAKS SGRNNFQFYT SKLNEIATRH VQLESGLKEA IQRNELSLVY QPKFCLKDGS LTGIEALLRW HHTELGPISP VEFIPLAEET GIITQIGHWV INQACQQLAE WNSLGFNGIT VAVNLSARQL KADIISTIEV ALAVSGLPAQ SLELELTESM IMGNPQESVS ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD DAAITSAIIA LAHSLDLNVV AEGVETQEQL NFLAMQGCDQ VQGFLLSKPL SAADFLTLLK NQSKPQPI
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