| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4006 |
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| Symbol | |
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| ID | 5373473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 4780560 |
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| End bp | 4782155 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640832272 |
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| Product | threonine dehydratase |
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| Protein accession | YP_001368190 |
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| Protein GI | 153002509 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCCAC TTGCATCGCA AGCTCGGACG GATTTAGCAC ATTTTCAGTT AGCACAAAGC
TATCTGCAAA AAATCCTGTT GTCATCTGTG TATGACATAG CGAAAGTGAC GCCGCTTTCA
AGCATGAACA AGTTATCGGC GCGTTTAGGT TGTCAGGTAT TTTTGAAGCG CGAAGATATG
CAGCCAGTGC ATTCCTTCAA GTTACGCGGT GCCTATAACC GTATCGCCCA GCTGACGAAA
GAAGAATGTC AGCGCGGCGT GGTGTGCGCT TCGGCAGGCA ATCATGCTCA GGGTGTGGCG
ATGTCGGCGG CGAGTCGCGG TGTGGATGCT GTGATTGTGA TGCCTGAGAC GACGCCCGAT
ATTAAAGTCG ATGCGGTGCG CCGTTTAGGG GGCAACGTGG TATTGCACGG CCAAGCCTTC
GATCAAGCCA ATGGCTATGC GATGGCGATG GCTAAAGAAG AGGGCCGAGT TTATATCGCG
CCCTTTGATG ATGAAGCGGT GATCGCAGGC CAAGGCACTA TCGCCCAAGA GATGTTGCAG
CAGCAGCGCG ATCTTGAAGT GGTATTTGTG CCCGTGGGCG GCGGCGGTTT AATCGCGGGT
ATCGCTGCCT ATTACAAGGC GGTGATGCCG CAGGTGAAAA TTGTCGGCGT CGAGCCTGAA
GATGCCGCCT GTTTAAAGGC GGCGATGGAA GCGGGCGAGC CGGTGACACT GGCGCAAGTT
GGTTTATTTG CCGACGGTGT GGCGGTAAAG CGTATCGGCA CTGAGCCATT TCGAGTCGCC
AAACTGTATG TCGATGAAGT GGTCACTGTG ACCTCGGATG AAATCTGCGC TGCGGTGAAA
GATATCTTCG AAGATACCCG TGCGATCGCC GAACCCGCTG GGGCTTTGTC CTTGGCTGGG
CTTAAAAAAT ATGTCAGCGC CAATGCCAGT GGAGACAGCG GTAAAGGCGA GAAAGTTGCC
GCGATTTTGA GTGGCGCGAA TGTGAATTTC CACAGTCTGC GTTATGTGTC GGAACGCTGC
GAACTTGGTG AGCAAAAAGA AGCAGTTCTG GCAGTGAAAG TCCCTGAACG TCCGGGAAGT
TTCTTAAAAT TCTGTGAGTT ACTCGATAAG CGGGTGATGA CGGAGTTTAA CTATCGTTTT
AGTAGTCGCG ATCTGGCCGT GGTGTTTGCC GGCATTCGCT TAAGCCGAGG CCAAGGCGAG
CTTGAACAAA TCATCGCTAC CTTAGAGGCT AACGATTTTG AAGTGCAGGA TTTATCCGGC
GATGAAACCG CGAAATTGCA TGTGCGCTAT ATGGTCGGCG GCCATCCACC TGAACCTTTA
GAAGAGCGTT TGTTTAGCTT CGAGTTCCCC GAACATCCCG GCGCGCTGCT GAAGTTTTTA
ACTACCTTGC AGAGCAAATG GAACATTAGT CTGTTCCATT ATCGCAACCA CGGCGCGGCC
TTTGGCCGAG TGCTGGCGGG ATTTGAAGTA CCCGCGAGTG ATGCTTTGCC GTTCCAACAG
TTTTTAACTG AGTTGGGTTT TGTCTATCAA GAGGAAACCC AAAGTCCTGC CTATCAGCTG
TTTTTAAATG CGGGTAACGG CAACAAAGTC TTATAG
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| Protein sequence | MLPLASQART DLAHFQLAQS YLQKILLSSV YDIAKVTPLS SMNKLSARLG CQVFLKREDM
QPVHSFKLRG AYNRIAQLTK EECQRGVVCA SAGNHAQGVA MSAASRGVDA VIVMPETTPD
IKVDAVRRLG GNVVLHGQAF DQANGYAMAM AKEEGRVYIA PFDDEAVIAG QGTIAQEMLQ
QQRDLEVVFV PVGGGGLIAG IAAYYKAVMP QVKIVGVEPE DAACLKAAME AGEPVTLAQV
GLFADGVAVK RIGTEPFRVA KLYVDEVVTV TSDEICAAVK DIFEDTRAIA EPAGALSLAG
LKKYVSANAS GDSGKGEKVA AILSGANVNF HSLRYVSERC ELGEQKEAVL AVKVPERPGS
FLKFCELLDK RVMTEFNYRF SSRDLAVVFA GIRLSRGQGE LEQIIATLEA NDFEVQDLSG
DETAKLHVRY MVGGHPPEPL EERLFSFEFP EHPGALLKFL TTLQSKWNIS LFHYRNHGAA
FGRVLAGFEV PASDALPFQQ FLTELGFVYQ EETQSPAYQL FLNAGNGNKV L
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