| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4000 |
|---|
| Symbol | |
|---|
| ID | 5372267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4774830 |
|---|
| End bp | 4776194 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640832266 |
|---|
| Product | sodium:neurotransmitter symporter |
|---|
| Protein accession | YP_001368184 |
|---|
| Protein GI | 153002503 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGG CCAATACAAG TTCGACTAAC CATTTCAGCT CACGCTTAGG TTTTATCATG
GCGGCAGCCG GTAGCGCCGT GGGTGTAGGT AACATTTGGG GATTCCCCAC CCAAGCAGCC
ACCCATGGCG GCGGAGCCTT TTTGCTGGTT TACCTAGTAC TGATTTTCAT CCTTGGCATT
CCCATGTTAA TGGCCGAACT CATGATAGGT CGCCACGGAC AGACCAACCC CGCCGATGCC
ATGGGCAAAC TCGGCTTCAA CACCCTAACT CGCAGTTTAG GCAAGGCGAT AGGTTTGATT
TCCATCGTCA CCGCGGGATT GATCTATACC TTTTACAGCA TTCTTTCTGG CTGGTTTGTC
AGCTACGCCA TCGCCCCGAT TGCCACAGCT TTGGGCTCGA ACGACACCGC AGCTTGGTTA
GTGGATTTCT CGCTATCGCG CAATCTCGTG TTCACGCTGA TCTTCAGCAC ACTCGTGTTT
CTGGTATTGC TGCAAGGCGT ACAAGAAGGC ATAGAAAAAT GGTCGAAACG CTTGATGCCG
TTATTGTTGA TCATGCTGAT CGCGGGCGTG GCGTATATCT TCACTCTTAA TGGCGCGAGC
GAAGGCATTA CCGCACTATT AACGCCTAAC TTTGCTAAGG CACTGGCGCC TGATACCTTG
ATCAGCGCGC TCGGACAAAC CTTCTTCTCC CTCACCATAG GCACAGGTGC CATGATGGTT
TATGGCAGCT ATTTGAGCCA AAAAGAGAAT ATTGCCAAAC TGACCGTCTG GGTTGCCTTT
ACCGATAGCG GCATCGCCTT TCTCGCCGCT TTCTTGATTA TCCCTGCCAT GTATGTGGCC
CAGCACAATG GCGTGGAGAT TTTTAACGCC GAGGGCAAAT TACTCGATTC AGATGCGCTG
GTGTTTACTG TCTTACCCGC TTTATTTTCG ACCTTAGGTG ACACAGCCAA CCTCATCATC
AGCGTGGTGT TCTTTATTCT GCTGATCATC GCCGGCCTGA CTTCTGCCAT TTCCATCGCC
GAAGTCCCGA CTAGCTATGT GATGCAAAAA TTCGGACTCA GCCGCCAGCG CGCAACCTTG
ATCATTGGCC TATTGCTGAC CTCATTATCC CTATTGTTGG CGGTATTTTT TGAGACGTTA
TTTAGCTTCA CTATTATGCT CACCACCCAA ATCGCCCAGC CGCTGGTCGC CCTCGGCATT
GCGATTTACT TAGGTTGGAT TTGGCGCCAA AGCCAGTTAC TCAAGGTGAT TCGTGGACAA
GATGGTGTTA ATACCGCAGG ACTCTTCTGG CGCATTTGGC CAAGGTACGT GAAGTATGTG
TGCCCAGTGC TGATTATCGC GATCGCCATC AGGCAATTTG TATAA
|
|---|
| Protein sequence | MQSANTSSTN HFSSRLGFIM AAAGSAVGVG NIWGFPTQAA THGGGAFLLV YLVLIFILGI
PMLMAELMIG RHGQTNPADA MGKLGFNTLT RSLGKAIGLI SIVTAGLIYT FYSILSGWFV
SYAIAPIATA LGSNDTAAWL VDFSLSRNLV FTLIFSTLVF LVLLQGVQEG IEKWSKRLMP
LLLIMLIAGV AYIFTLNGAS EGITALLTPN FAKALAPDTL ISALGQTFFS LTIGTGAMMV
YGSYLSQKEN IAKLTVWVAF TDSGIAFLAA FLIIPAMYVA QHNGVEIFNA EGKLLDSDAL
VFTVLPALFS TLGDTANLII SVVFFILLII AGLTSAISIA EVPTSYVMQK FGLSRQRATL
IIGLLLTSLS LLLAVFFETL FSFTIMLTTQ IAQPLVALGI AIYLGWIWRQ SQLLKVIRGQ
DGVNTAGLFW RIWPRYVKYV CPVLIIAIAI RQFV
|
|---|
| |