| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3989 |
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| Symbol | |
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| ID | 5370574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 4762418 |
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| End bp | 4765066 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640832255 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001368173 |
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| Protein GI | 153002492 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAAGG ATGAAGATGA AACTGGCCAG CCTCGTATAA ATGAAGCTGA ACGCTTACGC
AAAAAAATTA TTCGCTTAAA ACAATTAGCG CATAAGTATA AGCATGCTGA GATCATTCAA
AACGCATTAC TCGAAATTTC CAATATTGCG ACCCATGCTT CTTCACTCGA AGAATTCTAT
GTCGGCGTGC ATAGCCACCT AAAACAACTC ATTCCCGCTG ATAATTTTTT TATTTCAACC
CTCGATGTCA GCACGGGCGA GCTTGCTATC CCTTTTTTCG CCGACGAGAA AGACGCGCAT
CCTGCAGAGC TTTATCCTGA ACAATCCTTA TCAACATTAC TACAGCAGGG ATTAACAGGC
TACGTTCTCA GAACGGGTAA GGCTTTGTTA TGTGATGATG ACAAAGTCAA TGAACTGATT
GCCGCAGAGG AAATTGTTAA CTTAGGTTCT CCCTGCCATT TATGGCTTGG CGTGCCCATC
AAACACGATG ACATAGTGAC TGGCGTGTTA GTCGTGCAAA CCTACGACAC AAATGTCAGC
TATGGTGAAA TCGAACTCGA GTTGATGACC TTCATTTGCC ACCACATTTC TGGGGTAATG
GAACGGCTCA AACATCAGGA ACAATTAGAA CAAGCCATTC AGCAAAGAAC CAGAGAACTC
AGCCAAGCCT ACGACAAATT AAAACTAGAA GTCTATGAAA GACGCAGAGC TGAGCGCTTA
CAAAAATCAC TGTTCGAAAT TGCTGAATTA GCCAGTTCCA GTGCCGACAA CCCAGACTTT
TATACCCAAT TGCATAATGT CATTCGACAC CTCATTCCAG CCAATAATTG CTATATCGCG
CTTTTGGATG ACACAGGAAC TCATCTCACG TTCCCCTTTT ATGTCTCGCA ATTAGCCAAT
AAACATCCAG GAACTCGGCC GCTACAGGAT GGCTTAACCG AATATGTGCT CAAACATAAG
CGCCCATTAC TGTTAGATCA AAATAGTATC AATGCGTTAA TTGCCTCTGG CGAACTGTAT
TCCCAAGCGC CAGCGTTAAA CCACACTCAA ACTATGCATC AATGGATTGG CATCCCCCTC
TTTATCCATG ATCAAGTACG TGGTGCCTTG ACTATTTACA GTTTTAGCAT GACGCAAAAT
TACCAAGTCA AAGACTTAGA ATTACTGACA TTTGTCTCGC AACACATTGG TTCTGCGATT
GAGAAAAAAC TGTCCGCAGA GTCCTTGCAA CGCAGTTATG AAGAGTTAGA AGAAAAAGTC
ATCGACCGCA CTAAAGCGTT AGCCGAACTC AATCAAAACC TTGAAAAAGA AATTCAACAA
CGCCGCAGTA TGGAAGCTAA GTTAGTTCAC GACGCTAAAC ATGATGCGCT CACAGGCTTG
CCTAACCGCG CTATGTTTAT GGAACGCTTA TCTCAAGCCA TTAAGCACGT CCGTCGCCAT
AGCTTAGAAC AGTTTGCCCT GCTCTTTATC GATCTCGACC GCTTCAAACA GATTAACGAC
ACTATGGGGC ACTTAGAAGG CGATAAATTC TTAATTGAGA CTGCAAGCCG CCTCAAGTCC
TGCATTCGTG ATAACGATAC ATTAGCGCGT CTGGGTGGCG ATGAGTTCGT CATCCTGCTC
GATAGTATTA ACAACATCAA CGACGCAAGA GACGTATCAG AAAGAGTGAT CCAAAAAATA
TCCCAGCCCT ATCGACTCGG CACGATGGAA TTTAACTCTG GCGCGAGTAT CGGTATCACC
ATCAGTGGTA AGCATAAAGT CGATACCAGT GAATCTATGT TGCGCAACGC GGATACAGCC
ATGTATCAAG CGAAAGCCAA CGGTAAGGGC TGCTATGTTA TTTTTGATGA TAACGCCCAA
CATCAAGCTA TACAGGATGT CGAGTTAGAA AATGAATTTA GACAGGCATT ACACCATGCC
GAAATCGAAC TCAGTTATTT ACCTGTCGTC GATTTTAACA CTGGTCAAGT ACATGCATTA
GAAAGTCGCC TGTTTTGGCA GCACCCACTA CGTGGACTTT TACAACAAGA ACAACTCAGT
GCACTTGCTG AACAATCACA TCTTACCGTT GAACTCGATA AATATACGAT CAGCATAATA
GATCGCACTT ATGCTGAACT GCTCAAGCAA CATGATGAAT CTATTGAATT ACATGTGATG
CTTTCGAGCC AACATCTCAA GCATAAGCAC GTACTGCGCA GTTTGAAAAA CACCCTCAAG
CAGACCCAGT TAAACCTGAG CCATTTGTGG TTATTCTTTA ATGAAAAAGC CCTAGTGCAG
GAGACTGAAA ATCATATCAA TGGCTTTGAA TTGTTGCAGA AACTCGGGGT GAAACTCGGT
ATCAGTCATT ACGGTAGCGG CTATAGTGCA TTAAATAGCT TATTGTTTTT GCCGATTAAA
GGCTTAAAGC TCGACGCCAA TCTCACTAAA CAGATACACG CTGAACAGCT GCTTAAATTA
ATGTCCGCTT ATCAAAAAAC GGCATCAACC TTAGAACTGC AAACCTTTGT TGATGGCATT
GATAGCCCTG AACAAAAACG TATCTTCAGT GAACTGGGTT ATCAGCTGGG TCAGGGGGCT
GCTTTAGCCG ACACTTTTAC CTTAAGTGAC ACCCAATCAC AGATCTGTAC TCAGCTCGAA
TATGCCTAG
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| Protein sequence | MFKDEDETGQ PRINEAERLR KKIIRLKQLA HKYKHAEIIQ NALLEISNIA THASSLEEFY
VGVHSHLKQL IPADNFFIST LDVSTGELAI PFFADEKDAH PAELYPEQSL STLLQQGLTG
YVLRTGKALL CDDDKVNELI AAEEIVNLGS PCHLWLGVPI KHDDIVTGVL VVQTYDTNVS
YGEIELELMT FICHHISGVM ERLKHQEQLE QAIQQRTREL SQAYDKLKLE VYERRRAERL
QKSLFEIAEL ASSSADNPDF YTQLHNVIRH LIPANNCYIA LLDDTGTHLT FPFYVSQLAN
KHPGTRPLQD GLTEYVLKHK RPLLLDQNSI NALIASGELY SQAPALNHTQ TMHQWIGIPL
FIHDQVRGAL TIYSFSMTQN YQVKDLELLT FVSQHIGSAI EKKLSAESLQ RSYEELEEKV
IDRTKALAEL NQNLEKEIQQ RRSMEAKLVH DAKHDALTGL PNRAMFMERL SQAIKHVRRH
SLEQFALLFI DLDRFKQIND TMGHLEGDKF LIETASRLKS CIRDNDTLAR LGGDEFVILL
DSINNINDAR DVSERVIQKI SQPYRLGTME FNSGASIGIT ISGKHKVDTS ESMLRNADTA
MYQAKANGKG CYVIFDDNAQ HQAIQDVELE NEFRQALHHA EIELSYLPVV DFNTGQVHAL
ESRLFWQHPL RGLLQQEQLS ALAEQSHLTV ELDKYTISII DRTYAELLKQ HDESIELHVM
LSSQHLKHKH VLRSLKNTLK QTQLNLSHLW LFFNEKALVQ ETENHINGFE LLQKLGVKLG
ISHYGSGYSA LNSLLFLPIK GLKLDANLTK QIHAEQLLKL MSAYQKTAST LELQTFVDGI
DSPEQKRIFS ELGYQLGQGA ALADTFTLSD TQSQICTQLE YA
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