Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3984 |
Symbol | |
ID | 5370758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4755011 |
End bp | 4756393 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640832246 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001368168 |
Protein GI | 153002487 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAA ATTTAACCGC AAATGACTTA GACATGGTTG ATGATGTCTA CGGCGCCATG ATGACGGACG CTCCCAGCGG ACACAGGTTA ATCATATGGG CACTTGCAGC TATGGTTGTG TGTTTTTTAC TGTGGGCGGG TTTTGCTAAA TTAGACAAGG TCACCACTGG GACGGGGAAA GTCATCCCCT CATCACAAGT CCAAGTCATC CAGAGTTTAG ATGGCGGCAT AATGCAAGAG CTCTACGTTC AGGAAGGTGA AATGGTGACT AAAGGGCAAC CTTTAGTACG TATTGATGAT ACCCGCTTCC GCTCCGACTA TGCTCAACAA GAGCAAGAAG TTTTTGGCTT AAAAACCAAT GCTATTCGTA TGCGCGCCGA ACTCGACAGC ATTCTAATAT CAGACATGAC TTCTGACTGG CGCGAACAAG TACTCATTAC TAAAAAGGCA TTGGTATTCC CGGAGAATAT TATTGCAGCG GAACCAGCCT TAGTTAAAAG ACAACAAGAG GAATACAACG GACGCTTAGA TAACTTAAGT AACCAGCTGG AGATCTTGGT ACGTCAAATT CAACAAAGAC AACAAGAAAT TGATGATCTT GCGTCTAAAA CAACGACGTT AACCACCAGT ATGCAGCTGA TCTCCCGTGA GCTTGAACTC ACTCGGCCTT TAGCTAAAAA AGGTATCGTG CCTGAGGTTG AATTACTCAA ACTCGAACGC ACTGTGAACG ATTTGCAAGG CGAATTGAAT TCAATGCGCC TACTGCGCCC GAAAGTCAAA GCGGCGATGG ATGAAGCCAT CTTAAAACGC CGTGAAGCCG TATTCGTTTA TGCCGCCGAT CTACGCGCAC AGCTTAATGA AACCCAAACC CGCCTGTCTC GCATGAATGA AGCACAAGTG GGCGCACAGG ATAAAGTCAG CAAAGCCATT ATCACCTCAC CAGTCAATGG CACCATTAAA ACCACTCACA TCAATACACT AGGCGGCGTT GTGCAACCTG GAGTCGATAT TATCGAAATA GTGCCATCGG AAGATCAGTT ACTGATTGAA ACCAAAATCT TGCCTAAAGA TATCGCCTTC TTACACCCAG GATTACCCGC AGTGGTAAAG ATTACCGCCT ATGACTTTAC TCGCTATGGC GGCCTTAAAG GGACAGTTGA ACATATCAGT GCCGACACAT CCCAAGATGA AGAGGGCAAT AGCTATTATC TGATCCGAGT CAGAACTGCA GAATCCAGTT TAACCAAAAA CGATGGCACA CAGATGCCAA TTATCCCGGG AATGTTAACT TCGGTTGACG TTATCACGGG GCAAAGATCC ATACTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ACACAGCGCT CAGAGAGCAC TAA
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Protein sequence | MSKNLTANDL DMVDDVYGAM MTDAPSGHRL IIWALAAMVV CFLLWAGFAK LDKVTTGTGK VIPSSQVQVI QSLDGGIMQE LYVQEGEMVT KGQPLVRIDD TRFRSDYAQQ EQEVFGLKTN AIRMRAELDS ILISDMTSDW REQVLITKKA LVFPENIIAA EPALVKRQQE EYNGRLDNLS NQLEILVRQI QQRQQEIDDL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER TVNDLQGELN SMRLLRPKVK AAMDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV GAQDKVSKAI ITSPVNGTIK TTHINTLGGV VQPGVDIIEI VPSEDQLLIE TKILPKDIAF LHPGLPAVVK ITAYDFTRYG GLKGTVEHIS ADTSQDEEGN SYYLIRVRTA ESSLTKNDGT QMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALREH
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