Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3983 |
Symbol | |
ID | 5370757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4752837 |
End bp | 4755014 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640832245 |
Product | ABC transporter related |
Protein accession | YP_001368167 |
Protein GI | 153002486 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCAGCTG CAGCTTCTGA AAAAATTGAC CAATGGACCA TTTCAGCCTC GCAAAGAGTC TTAGTGGACC CGCTGCTGGA TTGTTTAGTG TTACTCACTG AGCATTTTGG CAACCCGTGC TCGAGCGACT CGCTTGCGGC AGGTTTACCT TTGTCAGGTG CGGTATTAAC ACCCGATTTA TTGCCTCAGG CCGCATCGAG AGCTGGCCTA GCGGCGAAGT TATCTCGAAA AGGCTTAAAC GAAGTATCAC CCATATTGCT TCCTTGCATT TTGTTATTAA AAGACAAGAA AGCCTGCATA TTGCGTGAAC TCGATGTTGA GTCCGATAAA GCGATTATTC AATTACCCGA GACAGGTGGT GAAGAGACGC TGACAATTGA GTCGCTCGAA GCTTTATATG TGGGATATTT ATTCTTAGTT AAACAAGAAT ACCGTGGTGA CATGGGCTTT GATGTTTATC TACACGATAA TAAAACCCAC TGGCTAGTCC AAACCCTAAA AGATTCTGCG CCCATTTATC GCGATGCATT AATCGCTTCT GTATTAGTGA ATTTGTTCGC CTTAGTTTCA CCTTTATTTA TCATGAATGT GTATGACAAA GTCGTGCCCA ATCTTGCCTT TGAATCCCTG TGGGTGTTAG CGATTGGCGC TTCTATTGCT TATTTATTTG ATCTTGTCAT GCGTCAACTC AGAAGCTACC TGATTGATGT AGCAGGTAAA AAAGTAGACA TCATAGTATC TTCTCGCCTC TTCGCTAAAG CAATTGGTAT CCCCTTAGAA AAACGCTCCC CCAGTATTGG CGGTATGGCA AAACAATTAG GCGAATTCGA TAACATCCGT GAGATTTTAA CCTCGGCGAC GATCACAACT TTAGTCGATC TGCCCTTTGC GGTATTTTTC TTAATTATTA TCTACATCGT TGCTGGCGAT CTCGCCATTG TTCCAGTGAT CGGTGGCGCC ATCATTATTG GCTTTACGCT TTATATTCAA CCTAAACTCA AAGCCGCTAT CGAAGAAGGC AATAAATTTT CAAGCCTGAA ACATGGGCAT TTAATCGAGA GTTTATCGGC ACTAGAGTCA ATCAAAGCCA ATGGTGCCGA AGGTATAGTA CAAAAAAGCT GGCAACAAAT GATAGGCCAC AGTGCCAACT GGCAATTAAG GTCAAAAAAG CTATCTAACT CAGTATCGAA CGTGGCTAAC TTCACAGTGC AATTTACCGT TGTTTGTGTG GTGATTTTGG GCGTTTATCG CGTGGCCGAT AATGCGATAT CGATGGGCGG AATTATTGCA GCCGTTATGT TATCAAGCCG TGCCATTTCA CCTATGGCGC AGCTTGCAGG CCTGATGACC AGAGCAAACC ACACTGCCAG CGCACTGCGT CAGCTTAATG AAATCATGAC TCAAGAAGAT GAGTTTGAAA ATAAAGGGCA TTTGGTTAGT AAACAAAGGC TGATAGGTAA AATCAATGCT GATCATGTCG GTTTTGGTTA CCCTGGTTCA GAAAAACCAG TACTTCATCC TATGTCACTG ACGATTAATC CCGGCGAGCG TATTGCGATT ATTGGCCGCA ATGGTTCAGG TAAAAGTACC CTTGCCAAGC TATTGGTTGG ACTATTTCAA CCTACAGCAG GAAGCTTGCG CTATGACGGT TTAGACTCGG CACAAATCCA TCCGAGTGAT TTACGCCGTA ACTTTGGTTA TTTGCCCCAA GATGTCACCC TGTTCCACGG TTCGATTCGC GACAATATTT TATTTGGTAC ACGCCAAGTC ACTGAACATC AGCTGATCCG TGCAGTACAA CTTTCTGGAG TGAGTCAATT TACCAACCTA GAAGCAGAGG GGTTAGACCA ACAGGTCGGC GAAGGCGGCA TGTCGCTCAG TCGCGGACAA AGACAGACCG TTGCCCTTGC TCGTGCCACA CTCAATGACC CTCCAGTGCT ATTGATGGAT GAGCCCACCG CCAGCTTGGA TGCGCGCGCA GAACAACAAT TTATTCGCTC AATGCAGAAT GTTAGCAAAG ACAGAACCTT GATTCTTATT ACCCATAAGA TGCATCTGTT GCAGCTTGTC GATCGCATTA TCGTACTCGA ACGCGGTCAT GTGGTCGCAG ATGGTCCCAA GGCAGAAGTG TTAGAAAAAC TCAATTTTGG CCTCGTGAAT GGAGAAGCTA AAAGATGA
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Protein sequence | MSAAASEKID QWTISASQRV LVDPLLDCLV LLTEHFGNPC SSDSLAAGLP LSGAVLTPDL LPQAASRAGL AAKLSRKGLN EVSPILLPCI LLLKDKKACI LRELDVESDK AIIQLPETGG EETLTIESLE ALYVGYLFLV KQEYRGDMGF DVYLHDNKTH WLVQTLKDSA PIYRDALIAS VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGASIA YLFDLVMRQL RSYLIDVAGK KVDIIVSSRL FAKAIGIPLE KRSPSIGGMA KQLGEFDNIR EILTSATITT LVDLPFAVFF LIIIYIVAGD LAIVPVIGGA IIIGFTLYIQ PKLKAAIEEG NKFSSLKHGH LIESLSALES IKANGAEGIV QKSWQQMIGH SANWQLRSKK LSNSVSNVAN FTVQFTVVCV VILGVYRVAD NAISMGGIIA AVMLSSRAIS PMAQLAGLMT RANHTASALR QLNEIMTQED EFENKGHLVS KQRLIGKINA DHVGFGYPGS EKPVLHPMSL TINPGERIAI IGRNGSGKST LAKLLVGLFQ PTAGSLRYDG LDSAQIHPSD LRRNFGYLPQ DVTLFHGSIR DNILFGTRQV TEHQLIRAVQ LSGVSQFTNL EAEGLDQQVG EGGMSLSRGQ RQTVALARAT LNDPPVLLMD EPTASLDARA EQQFIRSMQN VSKDRTLILI THKMHLLQLV DRIIVLERGH VVADGPKAEV LEKLNFGLVN GEAKR
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