Gene Shew185_3983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3983 
Symbol 
ID5370757 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4752837 
End bp4755014 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content45% 
IMG OID640832245 
ProductABC transporter related 
Protein accessionYP_001368167 
Protein GI153002486 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID[TIGR03375] type I secretion system ATPase, LssB family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCAGCTG CAGCTTCTGA AAAAATTGAC CAATGGACCA TTTCAGCCTC GCAAAGAGTC 
TTAGTGGACC CGCTGCTGGA TTGTTTAGTG TTACTCACTG AGCATTTTGG CAACCCGTGC
TCGAGCGACT CGCTTGCGGC AGGTTTACCT TTGTCAGGTG CGGTATTAAC ACCCGATTTA
TTGCCTCAGG CCGCATCGAG AGCTGGCCTA GCGGCGAAGT TATCTCGAAA AGGCTTAAAC
GAAGTATCAC CCATATTGCT TCCTTGCATT TTGTTATTAA AAGACAAGAA AGCCTGCATA
TTGCGTGAAC TCGATGTTGA GTCCGATAAA GCGATTATTC AATTACCCGA GACAGGTGGT
GAAGAGACGC TGACAATTGA GTCGCTCGAA GCTTTATATG TGGGATATTT ATTCTTAGTT
AAACAAGAAT ACCGTGGTGA CATGGGCTTT GATGTTTATC TACACGATAA TAAAACCCAC
TGGCTAGTCC AAACCCTAAA AGATTCTGCG CCCATTTATC GCGATGCATT AATCGCTTCT
GTATTAGTGA ATTTGTTCGC CTTAGTTTCA CCTTTATTTA TCATGAATGT GTATGACAAA
GTCGTGCCCA ATCTTGCCTT TGAATCCCTG TGGGTGTTAG CGATTGGCGC TTCTATTGCT
TATTTATTTG ATCTTGTCAT GCGTCAACTC AGAAGCTACC TGATTGATGT AGCAGGTAAA
AAAGTAGACA TCATAGTATC TTCTCGCCTC TTCGCTAAAG CAATTGGTAT CCCCTTAGAA
AAACGCTCCC CCAGTATTGG CGGTATGGCA AAACAATTAG GCGAATTCGA TAACATCCGT
GAGATTTTAA CCTCGGCGAC GATCACAACT TTAGTCGATC TGCCCTTTGC GGTATTTTTC
TTAATTATTA TCTACATCGT TGCTGGCGAT CTCGCCATTG TTCCAGTGAT CGGTGGCGCC
ATCATTATTG GCTTTACGCT TTATATTCAA CCTAAACTCA AAGCCGCTAT CGAAGAAGGC
AATAAATTTT CAAGCCTGAA ACATGGGCAT TTAATCGAGA GTTTATCGGC ACTAGAGTCA
ATCAAAGCCA ATGGTGCCGA AGGTATAGTA CAAAAAAGCT GGCAACAAAT GATAGGCCAC
AGTGCCAACT GGCAATTAAG GTCAAAAAAG CTATCTAACT CAGTATCGAA CGTGGCTAAC
TTCACAGTGC AATTTACCGT TGTTTGTGTG GTGATTTTGG GCGTTTATCG CGTGGCCGAT
AATGCGATAT CGATGGGCGG AATTATTGCA GCCGTTATGT TATCAAGCCG TGCCATTTCA
CCTATGGCGC AGCTTGCAGG CCTGATGACC AGAGCAAACC ACACTGCCAG CGCACTGCGT
CAGCTTAATG AAATCATGAC TCAAGAAGAT GAGTTTGAAA ATAAAGGGCA TTTGGTTAGT
AAACAAAGGC TGATAGGTAA AATCAATGCT GATCATGTCG GTTTTGGTTA CCCTGGTTCA
GAAAAACCAG TACTTCATCC TATGTCACTG ACGATTAATC CCGGCGAGCG TATTGCGATT
ATTGGCCGCA ATGGTTCAGG TAAAAGTACC CTTGCCAAGC TATTGGTTGG ACTATTTCAA
CCTACAGCAG GAAGCTTGCG CTATGACGGT TTAGACTCGG CACAAATCCA TCCGAGTGAT
TTACGCCGTA ACTTTGGTTA TTTGCCCCAA GATGTCACCC TGTTCCACGG TTCGATTCGC
GACAATATTT TATTTGGTAC ACGCCAAGTC ACTGAACATC AGCTGATCCG TGCAGTACAA
CTTTCTGGAG TGAGTCAATT TACCAACCTA GAAGCAGAGG GGTTAGACCA ACAGGTCGGC
GAAGGCGGCA TGTCGCTCAG TCGCGGACAA AGACAGACCG TTGCCCTTGC TCGTGCCACA
CTCAATGACC CTCCAGTGCT ATTGATGGAT GAGCCCACCG CCAGCTTGGA TGCGCGCGCA
GAACAACAAT TTATTCGCTC AATGCAGAAT GTTAGCAAAG ACAGAACCTT GATTCTTATT
ACCCATAAGA TGCATCTGTT GCAGCTTGTC GATCGCATTA TCGTACTCGA ACGCGGTCAT
GTGGTCGCAG ATGGTCCCAA GGCAGAAGTG TTAGAAAAAC TCAATTTTGG CCTCGTGAAT
GGAGAAGCTA AAAGATGA
 
Protein sequence
MSAAASEKID QWTISASQRV LVDPLLDCLV LLTEHFGNPC SSDSLAAGLP LSGAVLTPDL 
LPQAASRAGL AAKLSRKGLN EVSPILLPCI LLLKDKKACI LRELDVESDK AIIQLPETGG
EETLTIESLE ALYVGYLFLV KQEYRGDMGF DVYLHDNKTH WLVQTLKDSA PIYRDALIAS
VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGASIA YLFDLVMRQL RSYLIDVAGK
KVDIIVSSRL FAKAIGIPLE KRSPSIGGMA KQLGEFDNIR EILTSATITT LVDLPFAVFF
LIIIYIVAGD LAIVPVIGGA IIIGFTLYIQ PKLKAAIEEG NKFSSLKHGH LIESLSALES
IKANGAEGIV QKSWQQMIGH SANWQLRSKK LSNSVSNVAN FTVQFTVVCV VILGVYRVAD
NAISMGGIIA AVMLSSRAIS PMAQLAGLMT RANHTASALR QLNEIMTQED EFENKGHLVS
KQRLIGKINA DHVGFGYPGS EKPVLHPMSL TINPGERIAI IGRNGSGKST LAKLLVGLFQ
PTAGSLRYDG LDSAQIHPSD LRRNFGYLPQ DVTLFHGSIR DNILFGTRQV TEHQLIRAVQ
LSGVSQFTNL EAEGLDQQVG EGGMSLSRGQ RQTVALARAT LNDPPVLLMD EPTASLDARA
EQQFIRSMQN VSKDRTLILI THKMHLLQLV DRIIVLERGH VVADGPKAEV LEKLNFGLVN
GEAKR