Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3974 |
Symbol | |
ID | 5370971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 4723607 |
End bp | 4724851 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640832236 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001368158 |
Protein GI | 153002477 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATCACT TTCTCTACCA ACAAAATGCC CTGCACGCCG AAGGCTGCCA GGTTGCCTAT TTAGCTCAAA CCTATGGCAC ACCGCTGTAT ATCTATTCCC GCGCCACGCT AGAGCGCCAT TGGCATGCCT TTAATAATGC CGTGGCAGAT CATCCACATT TGATTTGTTA CGCGGTTAAA GCCAATGCGA ACTTGGCTGT ACTGAATGTG CTGGCACGTT TAGGCAGTGG TTTTGATATC GTGTCGGGCG GTGAGTTAGC AAGAGTGATG GAAGCGGGCG GCGATCCCGC CAAAGTGGTG TTCTCTGGCG TGGGTAAAAC TGCGGCTGAA ATGGAACAGG CACTTAATCT GGGCATTTAT TGCTTTAACG TTGAATCGAG TGCTGAGCTT GAGCAGTTAA ATCTGGTCGC TGGTCGTTTA GGTAAAGTGG CGCCTGTGTC CCTGCGGATT AATCCCGATG TTGATGCTGG AACCCATCCC TACATTTCGA CTGGCCTTAA AGAAAACAAA TTCGGTATTG CTATGGATGA GGCTGAAATC GTTTTCGCCC GTGCCCATGC GTTGCCACAT TTAAAAGTGA AAGGTGTCGA TTGCCATATC GGCTCACAAC TGACTGAAAT CAAACCATTC CTCGATGCGA TGGATCGTAT GCTCGCCTTG ATCGACCGTT TGGCCGAGCA GGGTATCGTT ATTGAGCATT TCGATGTGGG TGGTGGTTTA GGGGTGACCT ATGATGCCGA AACGCCGCCA CATCCTGATG TGTATGCTGC CGCCATATTG GCGCGTTTGG GCGACCGTCA ACTGAAGCTG ATCTTCGAAC CGGGCCGTGC GATTGCCGCC AATGCGGGGA TTTTTGTTAC TCAGGTGCTG TATCTTAAAG AAAACAGCGA CAAACGTTTT GCGATTGTCG ATGGTGCGAT GAATGACTTG ATTCGTCCCG CACTCTACAG TGCATGGCAA AATATTATCC CAGTCGTGCC AAGGGACTCA GAAGCCTATG AGTTTGATAT TGTTGGCCCA GTGTGCGAAA CCGGTGACTT TTTAGGTAAA AATCGCCAGC TCGCGTTAGC CGCGGGTGAT TTACTGGCGG TGCGTTCGAG TGGTGCCTAT GGTTTTGCCA TGGCCTCTAA CTACAACACG CGTCCTCGTG CGGCTGAAGT GATGGTGGAT GGTGAGCAGG CTTTCTTAGT GCGTGAGCGA GAAAAATTGT CTCAGCTCTG GCAAGGTGAG CAACTCCTGC CGTAA
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Protein sequence | MDHFLYQQNA LHAEGCQVAY LAQTYGTPLY IYSRATLERH WHAFNNAVAD HPHLICYAVK ANANLAVLNV LARLGSGFDI VSGGELARVM EAGGDPAKVV FSGVGKTAAE MEQALNLGIY CFNVESSAEL EQLNLVAGRL GKVAPVSLRI NPDVDAGTHP YISTGLKENK FGIAMDEAEI VFARAHALPH LKVKGVDCHI GSQLTEIKPF LDAMDRMLAL IDRLAEQGIV IEHFDVGGGL GVTYDAETPP HPDVYAAAIL ARLGDRQLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF AIVDGAMNDL IRPALYSAWQ NIIPVVPRDS EAYEFDIVGP VCETGDFLGK NRQLALAAGD LLAVRSSGAY GFAMASNYNT RPRAAEVMVD GEQAFLVRER EKLSQLWQGE QLLP
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