Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3973 |
Symbol | dapF |
ID | 5370653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 4722703 |
End bp | 4723530 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640832235 |
Product | diaminopimelate epimerase |
Protein accession | YP_001368157 |
Protein GI | 153002476 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGGGTC ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGC ATAGGTTTCG ACCAACTACT CTTAGTTGAG CCGCCCTATG ATCCCGATTT AGATTTTCAT TATCGCATCT TCAATGCCGA TGGCACTGAA GTCGAACAAT GCGGCAATGG CGCCCGCTGT TTCGCTCGTT TTGTGCGTAA TAAAGGCCTG ACAAATAAGA GCAAAATCCG TGTCAGTACT TCGTCTGGCA AGATGACTCT GCGCTTAGAG CGAGACGGTA CTGTTACCGT GAATATGGGC GTGCCGATCC TCGAACCGAG TCAGATCCCC TTCAAAGCCA AGAAACCTGA AAAAACCTAT TTACTGCAAA CACCGATGCA AACCTTTTTA TGTGGCGCGG CTTCTATGGG TAATCCCCAT TGCGTGCTCG ACGTTGAAGA TGTGGCGAGT GCTTCTGTTG CTGAAATTGG TGCCATGCTC ACTAAGCATG AGCGTTTTCC GCGCGGCGTG AATGTGGGGT TTATGCAGGT CGTAGACTCC GGCCACATTA AGCTGCGGGT GTATGAGCGC GGCGCGGCCG AAACCTTGGC CTGTGGCACA GGCGCATGTG CAGCTGTAGT TGTGGGTCAA GTGCAAGGAA AGCTCGGCCA GCAAGTGCGG GTGGATTTAC CCGGCGGCAC CTTAACCATC AACTGGGAAG GCGAGGGTAA ACCTTTGTGG ATGACGGGCC CCGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
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Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH YRIFNADGTE VEQCGNGARC FARFVRNKGL TNKSKIRVST SSGKMTLRLE RDGTVTVNMG VPILEPSQIP FKAKKPEKTY LLQTPMQTFL CGAASMGNPH CVLDVEDVAS ASVAEIGAML TKHERFPRGV NVGFMQVVDS GHIKLRVYER GAAETLACGT GACAAVVVGQ VQGKLGQQVR VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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