Gene Shew185_3968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3968 
Symbol 
ID5373653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4719134 
End bp4719637 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content48% 
IMG OID640832230 
Productputative transcriptional regulator 
Protein accessionYP_001368152 
Protein GI153002471 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.553588 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTTC AATCATTTGC ACTCGATGAT ATTGCCGATT TACACGAATC GGCCCAAGTA 
GAGTTTAAAC TCGCAGGTGG CCGCGACGGC CAAGGCCAAT TACCCGAAGA TATTTGGGCG
ACTTATAGCT CCTTTGCCAA CACTTTGGGT GGCGAAATCA TCCTAGGGGT GCGCGAAGAA
CGTGGCCATT TCAGTATTGA AGGTATTCCC AATCCGCTTC CTGTTTTACA AGAGTTTTGG
GAGATACTCG ATAATCCTAG CCGCACTAGC CATAATATTT TGGCGATCTC AGATGTGCAG
ATTATTGAAA TTATGAATAA AAAGCTGATT CGCATCCGTG TACCGCTGGC GCCAGAGCAG
CTCAAACCTA TCTATGTCGG CGGCGATCCT TACACTGGGA GTTATTTTAG GGTGGGAGAT
GCCGACATGC ATGCAAGCCG TCGGCAGGTC AATCTACTGT TACGCCGCGC CCATCTTTGC
ATGAAGCAAC TCAAGGCGCG TTAA
 
Protein sequence
MTFQSFALDD IADLHESAQV EFKLAGGRDG QGQLPEDIWA TYSSFANTLG GEIILGVREE 
RGHFSIEGIP NPLPVLQEFW EILDNPSRTS HNILAISDVQ IIEIMNKKLI RIRVPLAPEQ
LKPIYVGGDP YTGSYFRVGD ADMHASRRQV NLLLRRAHLC MKQLKAR