| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3919 |
|---|
| Symbol | |
|---|
| ID | 5370165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4649277 |
|---|
| End bp | 4651856 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640832180 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001368106 |
|---|
| Protein GI | 153002425 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTG GCAAGAAAAT AATGGTATTT ATTGCAGGCT TTTGTCTCCC TGCGGTGGTA
ATTGTCTCCT ATTGTCTTGG GTGTTGGTAC GACCATCGCG TCGAGCTATT ACGTCAAGAC
AGTGCTAACC GTGAGCTTGC TAATATCCAA CAGCAGTTTC AAATTGATGT CGATCGCTTA
ACCTTTCTCA CGAATATCTA CGCTTTACCT TTGTCGCAGT TAGATGAAGA GCAACTTAAG
AAACTAGAAT CCTCGTGGCA CGACAGTTCT ATGTCGGCCA ACCTCAGTTG GTATATTTTA
CGCCAAGGCG AGCTGCACAC TTTTTTCCCC AATGAAAATC CCTTTGCCTC TGATAAGTTG
CATGAAATCG CCAGCGCCAT CATCAATGCT AATAAACCCA GTGTAGCAGG CGCTTATTTG
ATTGGTGAGC AGACTTATGT CATCACCGCC GTGGCTTCTG CGCCTAATGA GTCTGTGCTG
CTAGTGCGCC AGTTGACCAA TAATGACTTA CTAGAGTATG CGCAGGCCTT ATTAGTGACT
AAGGTGACTA TGAGTCATTC TAACGCTGTC ACGGCAAGTG TTGAGGGCGT TCATAGTGAC
ACCATTGAAA TACCCAGCCT GTTAAAAGAC AAACCTGTTT ACCTGCAAGT GCAGTTCTCC
GAGGGCCCGT TCCAAGAGGT GAAATTTAAG CTCGATTGGG TATCGTTCGG ATTTATTCTA
TTTGGCGTGT TTATTGTTGG CCTTGGCTAT ATTTGGCTGC GCTCTGGTTT ACTCAAACCC
TTTAAAAACT TGATGCGGCA ATTGGCGCTG GTCGATCCTA TGTCCAGTGT CTATCAACCT
GTCGCCTGTG AGGGCAATGA GGAATTAGAA GTGCTTGCCA GCCGCGTTAA TAGCTTGCTG
GCCAGAATAT ATCAACAGAA AGAACGTGCA AAAATCACCT TAGAATCCAT TGCAGAAGCG
GTGATTTTAA CCGACGTCGA TGCCAAAGTG ATTTATATGA ATCCGCGGGC CGAGTCGCTT
CTGGATGTCG CCAGTTGTTA TGCCCTAGAT CAGAGCCTTG CGAGCCTGTT AAAGGCTGGC
GATCAGTTGA ATCAGGCGGT CTTCACTTGT ATTCGTCTTG GCGAATCATC ACCACAGGTC
GAGAAAATCA AGCTATTAAC TGCTTCGCCT CGGATTATGG AGCGCAGTAT CAGCAATCTG
CGCAATCACG ATAAAGAAAT TGTTGGTACT GTCGTGGTAT TGCGGGATAT CACTCAAGAA
GAGTTACTTA AACACCAGCT ACAAAAAAGG GCAAATTTCG ATAGCATTAC AGGGCTGCTA
AACCGTCAGG CATTTGATGA GCAGTTACCC CAATTTGCCG CTTCAGCTAA AACCATCGCC
GTTTGTTATC TCGATTTAGA GCAATTCAAG TTGATTAACG ACAGCTGTGG CCATACTGCA
GGCGATCGTA TGCTCGCTAT GGTGGCTAAG GCTATGCAGG CTTGTCTTGG GCCACAGGAG
CAGTTGGCGC GCCTTGGTGG CGATGAGTTC GGTTTAGTGA TTTGTAATCG CAGTGCTTTA
TCTGTGGCGC AATTACTCAA ACAAATGATC GCACAAGTCT CGCTGCAAGT GCTGAATGAC
AAAAACTGTA ACTATAAAGT CGGCCTCAGC ATAGGTGTCG CCTTTGGTCG AGCCCCCTAT
ATTGATGCAC AAGAATTATT GAAAGACGCG GATATTGCCT GCATTGCCGC TAAAGCTAAG
GGTGCCAATC AAATTCATTT TTACGATGAT AAAGATAAAG AGCTCACTTA CCAAAGAAAC
GCGCCTAAGT GGGCGGTACG TATTGCGCAG GCGATTGAAG AAAACGAGCT AATTCTGTAT
TACCAACCGA TCCGTGGGTT AGGCAGTGGT CCGCAGCGAC AACGCATGGA AATCCTGCTG
CGAATTCAAG AACCCTGTGG CCGTATTTTG GCGCCTGCGC AGTTTATTGC CGCGGCTGAA
CGCTTTAAGC TGATGCCTGA CATAGATAAA GAAGTGATCC GCAAAGCCTT TTTATGGTTG
TCTTTGCATC CGGTACTTTG GCCTGATCAC TGTATTTCGA TCAACCTTTC GGGCAATAGT
TTAGGCGCCG AAGGTATGGT GGAATATATC GCCCAGCAGC AGCATATTTT TGATATTCCA
AGTCAATGTA TTTGCTTTGA AATTACTGAA ACCACCGCGA TCCAAAATCG CAATCGTGGT
ATGGAAATGT TGAAGCAGTT ACGTAAGCTC GGTTTCTCGT TTGCCTTGGA TGATTTTGGC
AGTGGTTTCG CCTCTTACGG CTATCTGCGT GAATTACCTG TCGATTATGT CAAAATCGAT
GGCTGTTTTA TTAAGAATCT TGCCGTGAAC GCCAAAGACT ACGCCATCGT TAAATCGATT
CAAGATGTAT GTCGCGTCAT GGGGATCGAG ACCGTGGCCG AGTTTGTTGA AAATCAAGAT
ATTATCGACA GATTGTTGAG CATCGGGATT AACTACGCGC AAGGTTATGC AATAGGACGT
CCACAACCCT TAGCTAATTA TCGTGAACAA TATGAGATGA GGCTTGCACA ACGTGCGTGA
|
|---|
| Protein sequence | MHIGKKIMVF IAGFCLPAVV IVSYCLGCWY DHRVELLRQD SANRELANIQ QQFQIDVDRL
TFLTNIYALP LSQLDEEQLK KLESSWHDSS MSANLSWYIL RQGELHTFFP NENPFASDKL
HEIASAIINA NKPSVAGAYL IGEQTYVITA VASAPNESVL LVRQLTNNDL LEYAQALLVT
KVTMSHSNAV TASVEGVHSD TIEIPSLLKD KPVYLQVQFS EGPFQEVKFK LDWVSFGFIL
FGVFIVGLGY IWLRSGLLKP FKNLMRQLAL VDPMSSVYQP VACEGNEELE VLASRVNSLL
ARIYQQKERA KITLESIAEA VILTDVDAKV IYMNPRAESL LDVASCYALD QSLASLLKAG
DQLNQAVFTC IRLGESSPQV EKIKLLTASP RIMERSISNL RNHDKEIVGT VVVLRDITQE
ELLKHQLQKR ANFDSITGLL NRQAFDEQLP QFAASAKTIA VCYLDLEQFK LINDSCGHTA
GDRMLAMVAK AMQACLGPQE QLARLGGDEF GLVICNRSAL SVAQLLKQMI AQVSLQVLND
KNCNYKVGLS IGVAFGRAPY IDAQELLKDA DIACIAAKAK GANQIHFYDD KDKELTYQRN
APKWAVRIAQ AIEENELILY YQPIRGLGSG PQRQRMEILL RIQEPCGRIL APAQFIAAAE
RFKLMPDIDK EVIRKAFLWL SLHPVLWPDH CISINLSGNS LGAEGMVEYI AQQQHIFDIP
SQCICFEITE TTAIQNRNRG MEMLKQLRKL GFSFALDDFG SGFASYGYLR ELPVDYVKID
GCFIKNLAVN AKDYAIVKSI QDVCRVMGIE TVAEFVENQD IIDRLLSIGI NYAQGYAIGR
PQPLANYREQ YEMRLAQRA
|
|---|
| |