| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3915 |
|---|
| Symbol | |
|---|
| ID | 5371296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4643221 |
|---|
| End bp | 4644561 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640832176 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_001368102 |
|---|
| Protein GI | 153002421 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3385] FOG: Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCGG ATTTTTTTAT GCAACTCTCA GAAGCACTCG CCCGCACTCA TATTACCCGC
CTAACTGAAT TTACCTGCTT AGCTGATGTG TTAGAACCTG AGTTAATTCA ATCCTGTTTA
GACTCACAAG GCGTTGCGAC GTTAAGACGG CGTAAATTGC CGATGGATGC GATGATTTGG
GCCGTTATCG GAATGGCTTT GTTCCGAGGG GAGTCTGTTC GGTCACTCAT CAACAAACTC
GACATTGTTT TGCCGCAAGA GATTGATTAT GTTGCACGCA GCGCCGTGAC TCAGGCTCGA
AAACGATTGG GCAGTGAGGT TATTCGAGAA GTGTTTAGTC GCAGCGCCAA TACCTGGCAC
GCGAGAGCTG AACACCCTCA TTGGTGCGGT CTTAACTTGT ATGGTGTTGA CGGTGTAGTA
TGGCGGACAC CCGATAGTGT CCAAAATCAA GCCGCCTTTG CGCGTACCGC AAACGCTTCA
GGCGAAGCGG CTTATCCGCA AATTCGCATG GTTTGCTTGA TGGAGTTAAG CAGCCATTTG
TTGGTCAACA GCGCCTTTGA TTCGGTTGCC GAAAATGAAA TGAACTTAGC ATCTCAGCTC
ATTCCTAGCA TTCCCAATCA CAGCCTAACC CTATTTGACC GAGGATTTTA CTCGCTCGGC
CTTCTGCACG CTTGGCAGCA AGCGCAACCT GACAGCCACT GGTTGTTGCC ATTGAAGAAA
GGCACTCAAT ATGAGGTGGT TCGAACATTG GGAAAACATG ACCAGTGGGT GAAACTCACC
ACCACGCCTC AAGCCAGAAA GAAATGGCCG CAGCTCCCTG ATACCCTTGA AGCGCGTTTA
CTCACTAAGA CAGTGAAAGG TAAGTCAGTC GCCATTTTGA CCTCGTTGAC TGACCCGATG
CGTTACCCCA GCGAAGACAT CGTCGACTTA TATGCCCATC GATGGGAAAT CGAACTGGGC
TACAGAGAGA TGAAACAACA TCTGTTGGAG AGTCGTTTTA CGCTACGCAG TCAACTACCA
GAGCTGGTGA CTCAAGAGCT GTGGGGCGTG CTACTGGCCT ATAATCTCAT TAGATATAAG
ATGTTGCTGA TGGCTAAAAG CTTGCCATCG GTCCATCCTA ATCAACTGAG TTTTAGGGAT
GCGGCGAGTT ATATCATCTT CAAGTTGACA CAACTACCAT CACAAACACC GGGGAATGTC
CCGAGAGATG TATTGGATAT AGAACGAAAT GCACGGCAAT TTAAGTTGGA TGGTAAACGG
GAAAGGGCTT ATCCAAGAGT CCTTAAAATG AGCAAAAACA AGTATCCGGT TAGACCAAAG
AAAAATACCG TTCACTCTTA A
|
|---|
| Protein sequence | MSSDFFMQLS EALARTHITR LTEFTCLADV LEPELIQSCL DSQGVATLRR RKLPMDAMIW
AVIGMALFRG ESVRSLINKL DIVLPQEIDY VARSAVTQAR KRLGSEVIRE VFSRSANTWH
ARAEHPHWCG LNLYGVDGVV WRTPDSVQNQ AAFARTANAS GEAAYPQIRM VCLMELSSHL
LVNSAFDSVA ENEMNLASQL IPSIPNHSLT LFDRGFYSLG LLHAWQQAQP DSHWLLPLKK
GTQYEVVRTL GKHDQWVKLT TTPQARKKWP QLPDTLEARL LTKTVKGKSV AILTSLTDPM
RYPSEDIVDL YAHRWEIELG YREMKQHLLE SRFTLRSQLP ELVTQELWGV LLAYNLIRYK
MLLMAKSLPS VHPNQLSFRD AASYIIFKLT QLPSQTPGNV PRDVLDIERN ARQFKLDGKR
ERAYPRVLKM SKNKYPVRPK KNTVHS
|
|---|
| |