| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3878 |
|---|
| Symbol | |
|---|
| ID | 5371843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4602432 |
|---|
| End bp | 4604498 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640832139 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_001368065 |
|---|
| Protein GI | 153002384 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATA TGATTCCAGA GCTAGGGCAC ATATTGCTGA TCATGAGTAC TGTGTTGGCA
TTATTGTCGG CTAGTCATCA TTTAATCGGT AGCTACCGGA ATAACTTTTA CCTAATCAGC
TTTGGCAATA AATTATTCTA CGCTCTCTTT TTTACCTTAC TGGCAGCATT ATTTAGCTTA
ATTTTTAGCT TTATTACCGA TAACTTTTCA GTCGCCTATG TTGCCAATCA TTCTAATAGT
CAGCTCGCCC TCGGTTATAA AATCGCGGCG GTGTGGGGCA GCCACGAAGG CTCAATGTTA
TTTTGGGTGT TCGCCATTGC CCTGTGGGGT GCGGTGATCA ATTGGCGTCA AGCGACGCAT
AACGCCAAGC TCGCCAATTT ACAGGCTGAT AGGGCTTACT TTGGCAGAGT TCTCGCTATT
TTGGCCTTAG TGATCCTCGG CTTTAATTTG TTTTTACTCT TTACCTCCAA TCCCTTTGCC
CGCTTACTCC CAAACATTCC AGTCGAAGGA CGCGACCTTA ACCCCATATT GCAGGACATT
GGCTTAATAC TGCATCCACC AATGCTGTTT TTAGGTTATG TCGGGCTAAC GGTTTGCTTT
GCCGCAGCAC TGGCATCACT CATTGGGGGC AAATTACCTG CTCGCCACCT CGATTACCTT
CGCCCTTGGG TGTTACTGGC GTGGATTTTC CTTACTGGTG GCAATGCCTT TGGTTCTTGG
TGGGCCTATA ACGAACTGGG CTGGGGCGGA TGGTGGTTTT GGGACCCTGT AGAAAACGCG
TCATTTATCC CTTGGCTTGT CGCTACAGCA TTAGTCCATT CCATTGTTCT GACGAAACGC
ACTAATGGCT TTCAAATCAC AACATTGCTG CTGTGCCTAT TAGCTTTCTC ACTCAGTTTG
CTGGGCAGTT TTTTGGTACG TTCCGGCATA GTGCAATCGG TGCATGCCTT TGCCGCTGAT
CCTACCCGTG GTATGTCAAT CCTCTGTTTA TTAATACTTT TTGTTAGCGT AGCTCTGCTC
ACCTTTGCAC TTAAAGCCAA TAACTTCAGA CACTCAGTTC GGCATAGCAT TTTCAGTAAA
GAAACGCTGT TGCTACTCGG TATTGTAATA TTAGTCGTAG CGGCATTTTC CGTTCTACTC
GGTACCTTCT ATCCCTTGCT CTATGAATTA CTTGGTTTAG GTACACTTTC TGTCGGTGCC
CCTTATTTTA ATGCGATCTT TGTACCTCTG ACCTTCTTAC TCGTACTCTT GATGGGTGTC
GCCCCTTTAG CTGGTTGGCA AAAAGCATCC AAAGCTCAAG TTAAGCCTTT GATCATACCC
GGTGCACTGA TCTTAACTGC AGCTCTGTGG ATAAGCTTAC AAGCAGCAAC TGGCAACAAT
TTATTTCTGT TACTTGGCAC TGCAGCAGCG CTTTGGTTAC TCGTTTGCTT ATTATTAACA
TTGATAGCAG CATTAGGATT AAAAAATAAA AATCACCAAA ATAAACAGCC TGTTAAAGAA
AATATAAATA CAGCTAAGCC TCTCCCTAAA CGACGCCTCA TGGCCATGCT GCTTGCTCAT
TTAGGCGTGG CTGTAACTAT AATAGGTGCG ACGGCCGTCT CTTTCTTTGA ACAAGAAGCC
CTGCTAAGAA TGGGCCCAGG CCAAGGTAAG CCGTTAGCGG GTTATGTCTT AGTTTATGAA
AGTACCGAGA ATATCGAGAC CAAGAGTTTT ACTGCGATTC AAGCCAATAT CAGTATCCGT
GATGCAGCCC AAGATGAGCT GGTACTAGGT TATATCACCC CACAACGACA AACCTTCAAA
AGCAATGCCA TGGAAATGTC CCATGCTGGT ATTGATCACG GCCTATGGCG GGATATTTAT
GTCTCGATGG GATTGCAACT TAGTGATAAC GAATACCTGA TCCGCATCAG CTATAAACCC
CTTGCCAGTT GGATCTGGCT TGGGGCACTG CTAATGATGT TAGGTGGAAC TGTCGCCGCT
TGGCCTACTC GCAGCCTGAG TTATTACCCG AAACCAGCAG CCTTACCTAA CTCATCCCAT
TCATTGCAAA GGGAAATGCT TGCCTAA
|
|---|
| Protein sequence | MTNMIPELGH ILLIMSTVLA LLSASHHLIG SYRNNFYLIS FGNKLFYALF FTLLAALFSL
IFSFITDNFS VAYVANHSNS QLALGYKIAA VWGSHEGSML FWVFAIALWG AVINWRQATH
NAKLANLQAD RAYFGRVLAI LALVILGFNL FLLFTSNPFA RLLPNIPVEG RDLNPILQDI
GLILHPPMLF LGYVGLTVCF AAALASLIGG KLPARHLDYL RPWVLLAWIF LTGGNAFGSW
WAYNELGWGG WWFWDPVENA SFIPWLVATA LVHSIVLTKR TNGFQITTLL LCLLAFSLSL
LGSFLVRSGI VQSVHAFAAD PTRGMSILCL LILFVSVALL TFALKANNFR HSVRHSIFSK
ETLLLLGIVI LVVAAFSVLL GTFYPLLYEL LGLGTLSVGA PYFNAIFVPL TFLLVLLMGV
APLAGWQKAS KAQVKPLIIP GALILTAALW ISLQAATGNN LFLLLGTAAA LWLLVCLLLT
LIAALGLKNK NHQNKQPVKE NINTAKPLPK RRLMAMLLAH LGVAVTIIGA TAVSFFEQEA
LLRMGPGQGK PLAGYVLVYE STENIETKSF TAIQANISIR DAAQDELVLG YITPQRQTFK
SNAMEMSHAG IDHGLWRDIY VSMGLQLSDN EYLIRISYKP LASWIWLGAL LMMLGGTVAA
WPTRSLSYYP KPAALPNSSH SLQREMLA
|
|---|
| |