| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3857 |
|---|
| Symbol | |
|---|
| ID | 5373167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4574252 |
|---|
| End bp | 4575487 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640832118 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001368044 |
|---|
| Protein GI | 153002363 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACCG TTCAACATCA GGTTCAAAAT CCATCTGTCC AAAATCAGCA TAAGGGCGCC
AGTACACTAT GGGTATTGCT CGCCTTAGCG CTCGGGACGT TTGCCTTAGG TACCACAGAA
TTTGCTTCCA TGACCTTAGT GCCTTATATC GCCAGCGATT TAGGCGTAGA TGTCGCTCAC
GTGAGTTATG CCATTAGCGC CTATGCGCTG GGGGTTGTGG TCGGTTCGCC GATTATTATG
GTGCTAGCGG TTAGGGTCAG GCGGCGAACA CTCTTGATTG CTTTAGCTGC CTTAATGGCG
GTGGCCAATG GCTTAAGTGC GTTAGCGCCA TCATTGAATT GGCTAATCTT TTTCCGTTTT
CTCAGCGGCT TGCCCCACGG TGCCTATTTT GGTGTGGCTA TGTTGCTCGC GGCCTCTTTA
GTGCCGCCAG AAATGAAGGC CCGCGCTGTA TCGCGGGTGA TTATTGGCCT TACACTGGCG
ACGATTATCG GTGTGCCGTT TGCCACTTGG ATGGGGCAAA CCGTGGGCTG GCGCTCAGGC
ATTGGCATAG TGGCGATTTT GGCGACCATT ACTGCTGTGA TGGTGTATTT TTTAGCGCCT
GATCAAGCCG TGGCCGCTGA TGCGAGTCCA AGGAAAGAGC TACAAACCCT GAAGAATCGT
GAAGTCTGGT TGACGCTTGG CATCGCGGCG ATTGGCTTTG GCGGTATCTT TTGCGTGTAT
ACCTATCTGG CTGAAACCTT AATCCAAGTG ACGCAAGTCG AACCGTTTAA GATCCCGATC
ATGATGGCGG TATTTGGTAT TGGCGCAACA TTGGGCACCT TAGTGTGTGG CTGGGCGGCG
GATAAGTCGG CCTTAGCGGC GGCGTTTTGG TCGTTAGTGT TAAGCACTCT GGTATTAGCG
ATTTACCCGA GTTTGACCGG ACATTATTGG GCGCTGATGC CCGTAGTATT CTTTGTCGGT
TGTGGATTAG GGCTTGCCAC TATTGTGCAA GCCAGATTGA TGGATGTGGC ACCCGATGGA
CAGGCCATGA CAGGTGCGTT AGTGCAATGC GCCTTTAATC TTGCCAATGC AATTGGCCCT
TGGGTGGGCA GTTTAGTGAT CCTGTCTGGA CAAGGGATTG CCGCGACAGG TTATGCGGCG
TCTTTGTTGT CATTAGGAGG ACTTGTGATG TGGTGGCTGA CCCACAGGGA GAGTCGCCGC
GCGGTGAGCT TAAACACAGT CAATTGCGCT GACTAG
|
|---|
| Protein sequence | MKTVQHQVQN PSVQNQHKGA STLWVLLALA LGTFALGTTE FASMTLVPYI ASDLGVDVAH
VSYAISAYAL GVVVGSPIIM VLAVRVRRRT LLIALAALMA VANGLSALAP SLNWLIFFRF
LSGLPHGAYF GVAMLLAASL VPPEMKARAV SRVIIGLTLA TIIGVPFATW MGQTVGWRSG
IGIVAILATI TAVMVYFLAP DQAVAADASP RKELQTLKNR EVWLTLGIAA IGFGGIFCVY
TYLAETLIQV TQVEPFKIPI MMAVFGIGAT LGTLVCGWAA DKSALAAAFW SLVLSTLVLA
IYPSLTGHYW ALMPVVFFVG CGLGLATIVQ ARLMDVAPDG QAMTGALVQC AFNLANAIGP
WVGSLVILSG QGIAATGYAA SLLSLGGLVM WWLTHRESRR AVSLNTVNCA D
|
|---|
| |