| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3848 |
|---|
| Symbol | |
|---|
| ID | 5373515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4567305 |
|---|
| End bp | 4568576 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640832109 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001368035 |
|---|
| Protein GI | 153002354 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA ATACTCACTA CGAAAATGTC CTTCAACTGG ATGCTGTCAC GTCCCCTGAA
AAGCGTCGGT TTAACCTATC AACAATCGCG CTCGCATTCT TAGTGCTGAG CACGTTGGTA
TTTAACGCTC AGCCTGTATT GGCTGGCGGT GATCACGCAC CCGCGGCTAA GGAAAGCGGT
GATTCGGTAA CGCAAACGGC GCCGACGGAT GAACACGGTG CACAGGCGCT TAAGTTGACC
CAAGTGCAGC AAGTATTGGC GGGCATTAGC TTGTTACCCC TGTCGAGCGA TAGCTTGAAT
ATCGCCAATT TGAATCTGGA TATCAGGGCG ACGGCCACCT TAGTGGTGGA TCGCGATAGA
ACCGCGACCC TTGCGCCACA GCTCGATGTG CGCGTGTTAG CGCGTCATGT GGTGCCGGGG
CAAGAAGTCA AAAAAGGTGA GGCTTTACTT ACCTTGGGCG GCTCAGCCGT TGCGCAGGCA
CAGGCGGATT ACATCAATGC CGCCGCAGAA TGGAGCCGAG TTAAGCGCAT GAGCGAAGGC
GCCGTGAGTG TCAGCCGCCG TATGCAGGCG CAGGTGGATG CCGAACTTAA ACGCGCGATT
TTAGAGGCGA TTAAGATGAC GCCCGCGCAA ATTCGCGCTC TGGAATCGAT GCCAGAAGCC
ATCGGCAGTT ATCAACTTTT AGCGCCGATT GACGGACGAG TGCAGCAAGA TATCGCCATG
TTAGGCCAAG TATTTAGTGC GGGCACGCCG TTAATGCAGC TGACCGACGA GTCCTATCTG
TGGGTTGAGG CGCAGTTAAC GCCTACCCAA ACCGCGCATA TCACTGTCGG CAGTGCAGCC
TTAGTGCAAG TGGGGGATAA AACGCTGGCG GGCAAGATCA TAGGCCGCTC CCATGAACTC
GATAGCGTGA CTCGCACCGA GCAAGTGCTG GTGAGTATGC CCAATCCTGA TCATGTGCTG
CATGCGGGGC AATTTGCCGA ACTCTACTTT GCCAATACTG TCGCCAACTC TGCTGATAAG
GCTGGTGGAA TCGTGTTGCC CGATGCGGCG CTCACCCGCA GCGGCGACGG CGACTGGCAG
ATTTTTATTC AAGATGAGGA TGGCTTCGAG TCCATTGAGG TAGAAGTGGT GCAGCGTCAG
CGCGGCTTGA GTTTAGTGCG CGGCGCCGAG CTTGAAAAAG CCCAGCAAGC ACAGCTCAAG
GTCGTGGTGG CTGGCGCATT TTTCTTGGCG TCCGAGCAGA CGAAAGCAGG CTTTGATATC
CATAACCATT AA
|
|---|
| Protein sequence | MNSNTHYENV LQLDAVTSPE KRRFNLSTIA LAFLVLSTLV FNAQPVLAGG DHAPAAKESG
DSVTQTAPTD EHGAQALKLT QVQQVLAGIS LLPLSSDSLN IANLNLDIRA TATLVVDRDR
TATLAPQLDV RVLARHVVPG QEVKKGEALL TLGGSAVAQA QADYINAAAE WSRVKRMSEG
AVSVSRRMQA QVDAELKRAI LEAIKMTPAQ IRALESMPEA IGSYQLLAPI DGRVQQDIAM
LGQVFSAGTP LMQLTDESYL WVEAQLTPTQ TAHITVGSAA LVQVGDKTLA GKIIGRSHEL
DSVTRTEQVL VSMPNPDHVL HAGQFAELYF ANTVANSADK AGGIVLPDAA LTRSGDGDWQ
IFIQDEDGFE SIEVEVVQRQ RGLSLVRGAE LEKAQQAQLK VVVAGAFFLA SEQTKAGFDI
HNH
|
|---|
| |