Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3810 |
Symbol | |
ID | 5372802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4528925 |
End bp | 4530682 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640832071 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001367997 |
Protein GI | 153002316 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000137032 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGTT TAGATCTGGC TAAAGAGCTC GATAAGATAA TTTCTAAATC GGCAATTAAT CCCTTATTTC AGCCAATTTT CAATATATTA GAACATAAAA TCCACGGTTT TGAAGCCTTG AGCCGCGGCC CTGAACACAG CCCGTTATAC TCTCCAGTGC CGCTATTTCA GACAGCAGAG CATGAAGGCA AGTTAAGCGA GTTAGAAACC CTTTGTCGGC GCATTTCACT CGAGCAATTT AAGCTGCGTC AGTTTCAAGG CAAGCTGTTT ATCAATATTT CACCCAAGGC ATTATTAGAT CCCGCGCACC CCAAGGGCAT GACCTTACAG CTATTGCAAC AACTCGGCAT AGCGCCATCG CAGGTGGTGA TTGAGCTGTC AGAGCAATAT CCCGCCGATG ATATCGACTT ACTCAAATCT TGCTTGAATC ATTATCGCAG CCAAGGTTTT TTAACGGCCA TCGATGACTT AGGTGCGGGT TATTCAGGCC TAAGACTCTG GTCAGAATTG TCGCCCGACT ATGTCAAAAT CGACCGCCAC TTTATCCATG AAATTGATTC GCCCCCCGTC AAACAAGAGT TTGTCCGCTC AATTGTGGAG TTATGCCAAA GCTTAACCTG CAAAGTGATA GCAGAAGGGA TTGAAACGCA AGAGGAATTA GCCGTACTCA AACAACTGGG TATCGTCTAT TGCCAAGGCT ATTTGCTTGG TCGCCCAGAA GTGCTCCCCT GCCGCGCGAT GAAAGCGACC TTAGTGCCAA ACAATACTCA GATTCAACCT AGATACAGCG AATCCGCCGA AAGTCTGTGC ACGAATGCCA TCACAGTTGC GCCTACACTC AAACTCAAAT TTTTAAGTGA CACCTTTAGC TCGCAACCCG CACTGCAGGC AGTGGTTGTG GTCAATAATC AGTTACCGCT GGGGATTATC AGCCGCGCGA CCTTACTCGA ACTTTTCAGT ACGCCCTATG GTCGAGCCTT GCATGAGAAT CATGCCGTAA GTGAAGTGAT GGACCCGCAG GTCATCCAAA TTGAAGCCAA CGAACCCTTA TCTACTGTGA GCCAATTGCT GACCTCAGAG ACGGCCAATA CGGTCGCTCA GCAGTTCATC ATACTTCGCC GTGGCAAACT GCTCGGCATT GGCCACACCA AAGATTTACT GCAAAGGATC ACAGAGCACA GAATTAAGAT GGCCCGCCAT GCAAATCCTC TGACAGACTT GCCGGGCAAT GTGCCCATTC AGGAGGAATT AAAACGCCTT AAAATCCAAA AGAAACACTT TTATCTAGCC TATTTTGATT TATGTAACTT TAAGCCCTAT AACGATATTT ATGGCTTTTG TCGCGGCGAT GAAGTGATTT GTGAAGTGAC GAATCTGTTA CTGAAATATA AAAGTGACAA TTGCTTTATC GGCCATGTCG GCGGCGATGA CTTTGTAATT ATCAGCACCT GTGAACATAT GATCAGCCGT TGTCAGCGAA TTCTAGCGGA CTTTGAAACC CATAAGCATT TGTTTTACAG CGCCGAGCAT TGGCAAGCGC AAGAGATGCT CGCCGACGAT AGACAAGGCG AAGCCTGCTA CCATCAATTG ATCAGCCTGT GCGTGGGTAT CTTGCCACCA GCACTGACCT TTAACGCCAA TGAACATAGC TTGTCGACCT TAAGTGCCCG GGCAAAAAAA CAGGCAAAAT CCGCGAATAA CGGATTTTAC CTGTTAGAAA ATCACCTTAC TATCGAGACT CAAGCGCTCA GTGCTTGA
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Protein sequence | MTSLDLAKEL DKIISKSAIN PLFQPIFNIL EHKIHGFEAL SRGPEHSPLY SPVPLFQTAE HEGKLSELET LCRRISLEQF KLRQFQGKLF INISPKALLD PAHPKGMTLQ LLQQLGIAPS QVVIELSEQY PADDIDLLKS CLNHYRSQGF LTAIDDLGAG YSGLRLWSEL SPDYVKIDRH FIHEIDSPPV KQEFVRSIVE LCQSLTCKVI AEGIETQEEL AVLKQLGIVY CQGYLLGRPE VLPCRAMKAT LVPNNTQIQP RYSESAESLC TNAITVAPTL KLKFLSDTFS SQPALQAVVV VNNQLPLGII SRATLLELFS TPYGRALHEN HAVSEVMDPQ VIQIEANEPL STVSQLLTSE TANTVAQQFI ILRRGKLLGI GHTKDLLQRI TEHRIKMARH ANPLTDLPGN VPIQEELKRL KIQKKHFYLA YFDLCNFKPY NDIYGFCRGD EVICEVTNLL LKYKSDNCFI GHVGGDDFVI ISTCEHMISR CQRILADFET HKHLFYSAEH WQAQEMLADD RQGEACYHQL ISLCVGILPP ALTFNANEHS LSTLSARAKK QAKSANNGFY LLENHLTIET QALSA
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