Gene Shew185_3810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3810 
Symbol 
ID5372802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4528925 
End bp4530682 
Gene Length1758 bp 
Protein Length585 aa 
Translation table11 
GC content47% 
IMG OID640832071 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001367997 
Protein GI153002316 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000137032 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGTT TAGATCTGGC TAAAGAGCTC GATAAGATAA TTTCTAAATC GGCAATTAAT 
CCCTTATTTC AGCCAATTTT CAATATATTA GAACATAAAA TCCACGGTTT TGAAGCCTTG
AGCCGCGGCC CTGAACACAG CCCGTTATAC TCTCCAGTGC CGCTATTTCA GACAGCAGAG
CATGAAGGCA AGTTAAGCGA GTTAGAAACC CTTTGTCGGC GCATTTCACT CGAGCAATTT
AAGCTGCGTC AGTTTCAAGG CAAGCTGTTT ATCAATATTT CACCCAAGGC ATTATTAGAT
CCCGCGCACC CCAAGGGCAT GACCTTACAG CTATTGCAAC AACTCGGCAT AGCGCCATCG
CAGGTGGTGA TTGAGCTGTC AGAGCAATAT CCCGCCGATG ATATCGACTT ACTCAAATCT
TGCTTGAATC ATTATCGCAG CCAAGGTTTT TTAACGGCCA TCGATGACTT AGGTGCGGGT
TATTCAGGCC TAAGACTCTG GTCAGAATTG TCGCCCGACT ATGTCAAAAT CGACCGCCAC
TTTATCCATG AAATTGATTC GCCCCCCGTC AAACAAGAGT TTGTCCGCTC AATTGTGGAG
TTATGCCAAA GCTTAACCTG CAAAGTGATA GCAGAAGGGA TTGAAACGCA AGAGGAATTA
GCCGTACTCA AACAACTGGG TATCGTCTAT TGCCAAGGCT ATTTGCTTGG TCGCCCAGAA
GTGCTCCCCT GCCGCGCGAT GAAAGCGACC TTAGTGCCAA ACAATACTCA GATTCAACCT
AGATACAGCG AATCCGCCGA AAGTCTGTGC ACGAATGCCA TCACAGTTGC GCCTACACTC
AAACTCAAAT TTTTAAGTGA CACCTTTAGC TCGCAACCCG CACTGCAGGC AGTGGTTGTG
GTCAATAATC AGTTACCGCT GGGGATTATC AGCCGCGCGA CCTTACTCGA ACTTTTCAGT
ACGCCCTATG GTCGAGCCTT GCATGAGAAT CATGCCGTAA GTGAAGTGAT GGACCCGCAG
GTCATCCAAA TTGAAGCCAA CGAACCCTTA TCTACTGTGA GCCAATTGCT GACCTCAGAG
ACGGCCAATA CGGTCGCTCA GCAGTTCATC ATACTTCGCC GTGGCAAACT GCTCGGCATT
GGCCACACCA AAGATTTACT GCAAAGGATC ACAGAGCACA GAATTAAGAT GGCCCGCCAT
GCAAATCCTC TGACAGACTT GCCGGGCAAT GTGCCCATTC AGGAGGAATT AAAACGCCTT
AAAATCCAAA AGAAACACTT TTATCTAGCC TATTTTGATT TATGTAACTT TAAGCCCTAT
AACGATATTT ATGGCTTTTG TCGCGGCGAT GAAGTGATTT GTGAAGTGAC GAATCTGTTA
CTGAAATATA AAAGTGACAA TTGCTTTATC GGCCATGTCG GCGGCGATGA CTTTGTAATT
ATCAGCACCT GTGAACATAT GATCAGCCGT TGTCAGCGAA TTCTAGCGGA CTTTGAAACC
CATAAGCATT TGTTTTACAG CGCCGAGCAT TGGCAAGCGC AAGAGATGCT CGCCGACGAT
AGACAAGGCG AAGCCTGCTA CCATCAATTG ATCAGCCTGT GCGTGGGTAT CTTGCCACCA
GCACTGACCT TTAACGCCAA TGAACATAGC TTGTCGACCT TAAGTGCCCG GGCAAAAAAA
CAGGCAAAAT CCGCGAATAA CGGATTTTAC CTGTTAGAAA ATCACCTTAC TATCGAGACT
CAAGCGCTCA GTGCTTGA
 
Protein sequence
MTSLDLAKEL DKIISKSAIN PLFQPIFNIL EHKIHGFEAL SRGPEHSPLY SPVPLFQTAE 
HEGKLSELET LCRRISLEQF KLRQFQGKLF INISPKALLD PAHPKGMTLQ LLQQLGIAPS
QVVIELSEQY PADDIDLLKS CLNHYRSQGF LTAIDDLGAG YSGLRLWSEL SPDYVKIDRH
FIHEIDSPPV KQEFVRSIVE LCQSLTCKVI AEGIETQEEL AVLKQLGIVY CQGYLLGRPE
VLPCRAMKAT LVPNNTQIQP RYSESAESLC TNAITVAPTL KLKFLSDTFS SQPALQAVVV
VNNQLPLGII SRATLLELFS TPYGRALHEN HAVSEVMDPQ VIQIEANEPL STVSQLLTSE
TANTVAQQFI ILRRGKLLGI GHTKDLLQRI TEHRIKMARH ANPLTDLPGN VPIQEELKRL
KIQKKHFYLA YFDLCNFKPY NDIYGFCRGD EVICEVTNLL LKYKSDNCFI GHVGGDDFVI
ISTCEHMISR CQRILADFET HKHLFYSAEH WQAQEMLADD RQGEACYHQL ISLCVGILPP
ALTFNANEHS LSTLSARAKK QAKSANNGFY LLENHLTIET QALSA