Gene Shew185_3794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3794 
Symbol 
ID5370270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4513912 
End bp4514898 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID640832055 
Productdiguanylate cyclase 
Protein accessionYP_001367981 
Protein GI153002300 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.807786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAACG ACCAAAGCGC AATGAACGAA CTACACTGGC TCATCGATAT GGTGCAAACC 
ATAGAGGTGG GATTAGTGGT ATTAGATCGC CATTACAATA TCCAGCTGTG GAACGGTTTT
ATGGAGAATC ACAGCGGTGT TTCCCCTAAT TCGATCAAAG GTCAAAACCT GTTTACCCGC
TTCCCCGATC TGCCCGCCAC TTGGTTAAAG CAGAAAATGG AATCGGTTTT CATGCTTAAA
AACCGTGCCT TTATCAGCTG GGAACAAAGG CCATACGTTT TCCAATTTAA AAACTACCGC
CCGATCACAG GCCGTGCAGA CTACATGTAC CAAAACGTGA CCTTGTTGCC ACTGGCATCG
CTTACAGGGC AAGTGACCCA TATCAGCGTG ATTATTTATG ATGTGACTGA TATTGCCATC
AACAAGTTAC AACTTAAAGC CGCGAACGAG CAACTCGAGC GCCTAAGCCA AACCGATGGT
TTGACTCAGT TGCATAACCG TCGTCATTGG CAAGAATGTT TAGACCATGA GTACGACATG
TATGCCCGCT ACTCAGGCAT GGCAAGTTTA GTGATGATAG ATATCGATAA CTTTAAACAT
ATCAACGACA GCTATGGTCA TCTGGCGGGT GATAAAGTGA TCCAGCATAT CGCCCACTTA
CTCAGCCAAT CCCTGCGTGA GACCGATTGT GCCGGACGTT ATGGCGGTGA AGAATTTGCG
GTTGTATTGC CCAAAACCAG CGGCGCAGAT GCGATGAATT TTACCGAGCG GCTCAGGGAA
AAAATCGCCG CATCCGTCAT AGTGTATGAA AGCTTGAAGA TCTCTGTGAC TGTGAGTTTA
GGTGTATGCG AAATTGGTTC CCACATCACC AGCAGCTCAA GCTGGATTTC TTGCTCCGAT
AAAGCGCTGT ACGAAGCCAA GCAAAAAGGC CGTAATTGCA GCGTTCTGCA TACCAGTACA
TCTGCGAAAA AAATCAGCCA AACTTAA
 
Protein sequence
MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR HYNIQLWNGF MENHSGVSPN SIKGQNLFTR 
FPDLPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADYMY QNVTLLPLAS
LTGQVTHISV IIYDVTDIAI NKLQLKAANE QLERLSQTDG LTQLHNRRHW QECLDHEYDM
YARYSGMASL VMIDIDNFKH INDSYGHLAG DKVIQHIAHL LSQSLRETDC AGRYGGEEFA
VVLPKTSGAD AMNFTERLRE KIAASVIVYE SLKISVTVSL GVCEIGSHIT SSSSWISCSD
KALYEAKQKG RNCSVLHTST SAKKISQT