Gene Shew185_3745 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3745 
Symbol 
ID5369732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand+ 
Start bp4452750 
End bp4453295 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content48% 
IMG OID640832002 
Product2'-5' RNA ligase 
Protein accessionYP_001367932 
Protein GI153002251 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.877647 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACAAA GGCTATTTCT CGGCTTCGCG CCTACCGCTG CACAAATGAC AAGGCTGAGT 
GATGTACAAC AGCAGCTAAT TTGTCACCTC AATCCTGAGG CGAAAGCGGT TAGCGTCAGT 
AATATGCATT TAACGCTCTG CTTTTTAGGG CAAGTTGACG ACGAGCAACG CATCGCACTC 
CTTGATGCGA TTGACTGCTT AGCTAAGCCT AGATTCAGCG TTCAACTTAA CCAGCTCGAC 
TTATGGCCCA ATGCCCAAGT CTGTTGCTTG AAAGGCGATG AAGTTGAGCC GCCGTTAGCG 
CAATTAGCTA AGCAGACGCA AGCAATCGCA GGCCGCCTGC AATTGCATAG CAGTGAACAC 
CACTTTTGCC CGCACATCAG TTTATTCAGG AAGGCAAAAC AATGGACGCT AGATGAGTCG 
GCGTTATTGC AACTCAAGGA CATGAATACG CTAACGTTAA CGCCCGAACG TTTGCATTTA 
TATCATTCAA AAAACACAAG CACGGGTGTG GAATATCACA TCCTACATTC TTGGACGCTC 
GATTAG
 
Protein sequence
MQQRLFLGFA PTAAQMTRLS DVQQQLICHL NPEAKAVSVS NMHLTLCFLG QVDDEQRIAL 
LDAIDCLAKP RFSVQLNQLD LWPNAQVCCL KGDEVEPPLA QLAKQTQAIA GRLQLHSSEH 
HFCPHISLFR KAKQWTLDES ALLQLKDMNT LTLTPERLHL YHSKNTSTGV EYHILHSWTL 
D