| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3744 |
|---|
| Symbol | |
|---|
| ID | 5369731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4450331 |
|---|
| End bp | 4452550 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640832001 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001367931 |
|---|
| Protein GI | 153002250 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTAG GTTTAGCAAA TCCACTCCAA CAGGCCTTGG TGAGTATTTT TAGTGAGTCT
CCGCTAGAAA CCTTAGAGCA AAATGTTGAC CGAGCACTTG AGACCATCAC ATTGCAGTTG
CATTGTGACG GAGTATTTGT ATTGACCGGC AGCCAGTCTC TGGATCGTTT ACGCACGCGT
AATTTGTATC TAAAACCCCA ATTTGCCAAA GGCCAACAAA CCCGAGTCTG GCCCTTGGCA
CGCATGCCAT TCTTTCGCTC CCTTGTCCGC ACCCCGCGAC TATTAAATCT GCCCGATGTG
AATACCTTGC CCGCCGATGC GCAGGCCGAG CGAGCCCTAT TAAGGGACTG GGACGTGAAG
AGTCTATTGG TATTGCCACC TGTGGTATTT GGCGAAACGC GTATTGCGCT GGGCGCAGTC
AATTGCTCCG AGTGTTGCGA ATGGAGCGAA GAGTTTATAA GTGAGTTTAA CCACGCCGCT
GTGATGATTG GCTCGGCGAT GGAACTGACG CGTATCGCCC TGAGCATGCT CGCCAGTGAG
CATAAATACT GTGAAGTCTT CAATCAGTTA CCCTTAGCCT GCGCCTTGTT AGATAAATAT
AATCAATTGA CTATGCTCAA TAAAGTCGCC CTGCAAACGC TGCCAATCCA ACATGGTTAT
GATTTATTCG ACATGGTGCG TGAGGAAGAA CATGCCATGT TAACTGATAC CTTGCATGTG
GTACGTGAAG GCGTGCTTGG TCAGGCTTGG TGTGAGTTAC CGTTGAAGTC TATCCATCAG
TTGGCTTGGT TGAAACTCAG TTTTAGCCAG ATCAGTGGCG ATAAAGATAC CTTAGTCATG
ATTGCCGAAG ATGTCAGCGA GAAGTATCGT CTAGCCGATG AGCTGTCGTT CCATGCCAAT
TATGATGCGC TCACAGGATT GCCCAATCGG TTGCATTTCG AAGCCCTATT AGAAAACCTG
CTGCACGCCC ACGACGACAT GCCAATATGT GTGGCGTTTC TCGATTTAGA CCAATTCCAA
GTCATCAACA ATATCAGTGG CCATCAGGCG GGCGATAAGC TGCTTTGCCA AGTGGCATTA
CGCTTAAAAC AGCTCGTGCG TAAGGGCGAT ATCGTCGCCC GTTTAGGAGG CGATGAATTT
GGTATCTTGA TGCATTATTG CAATGTGGAC TCGGCGAAAC AAATCGCAAA ACGTATCTGT
ACCCAATTGG CGAACCATGA ATTTATTTGG GAAGGTCGCA GCCACAATGT CAGTGTCAGC
ATGGGGATTG CTAAACTCGA TAAAAAAGCC GCCGACATTT ATACCGTCAT GAGTCAGGCC
GATGCTGCTT GTCGCTTGGC GAAGGATCAA GGCCGTAATG GCTGGCATTT ATACAGTGCG
AGCGATCCTA AAATGAACCG TCTCTATACT GAGATGATGG CGTCGGTGGA CATAGTCGGC
GCACTGGCGT TAAACCAATT TGAGCTTTAT TTTCAAAGCA TAGTGCCATT AAACCGCGAG
GAGTCAGGTC TGCATTTAGA GATCTTACTG CGTATGGTGC AGGCCAACGG CACTATTGTG
TCTCCAGCCA TTTTCTTGCC CGCCGCCGAG CGATATAACT TAGCTTCTAA GGTCGACTTG
TGGGTGTTCG ATAATTTGCT CAAGTGGGGC GGTTGCCATT TAGATATCTG GCAGCAATTG
GACCTAGTGT CGGTGAATTT GTCAGCGACG TCTTTGGGCG ACCATGAGTT TATGAACTGG
CTAGAAATGC GTTTGATGGC CGAACCTGAG CTGGTGGACA AGCTTTGCAT CGAGATCACT
GAAACCGCGG CCGTGAGTCA GCTCGATCAA GCGACAAAGT TACTCGATAT ACTGCGCCCG
CTTAATTGTA AGTTAGCCCT CGATGACTTT GGGGCTGGCT TTTCTAGCTT CGCCTACCTT
AAGCGCCTTA ATGTGGACTT TGTGAAGGTG GATGGTCAGT TTGTGGTGAA CATCTGCGAA
GACAGTGCGG ATCAGGCGAT CGTTAAATCG ATTTGCCAAC TCGGCCAAGA TATGGGCTTC
GATGTGGTTG CCGAATTTGT CGAATCCCAA GATATTGGCC GAAAACTGCA AACCCTTGGC
GTCGACTATG CCCAAGGTTA CGCCATCAAT AAACCGATAC GGTTAGCTGA GCTAACGTCA
GGGCTCAGCC GACCTTGGCT CGAAAAACGT GAGACCTTTG CGGCCTATCC ACAACTCTAG
|
|---|
| Protein sequence | MLVGLANPLQ QALVSIFSES PLETLEQNVD RALETITLQL HCDGVFVLTG SQSLDRLRTR
NLYLKPQFAK GQQTRVWPLA RMPFFRSLVR TPRLLNLPDV NTLPADAQAE RALLRDWDVK
SLLVLPPVVF GETRIALGAV NCSECCEWSE EFISEFNHAA VMIGSAMELT RIALSMLASE
HKYCEVFNQL PLACALLDKY NQLTMLNKVA LQTLPIQHGY DLFDMVREEE HAMLTDTLHV
VREGVLGQAW CELPLKSIHQ LAWLKLSFSQ ISGDKDTLVM IAEDVSEKYR LADELSFHAN
YDALTGLPNR LHFEALLENL LHAHDDMPIC VAFLDLDQFQ VINNISGHQA GDKLLCQVAL
RLKQLVRKGD IVARLGGDEF GILMHYCNVD SAKQIAKRIC TQLANHEFIW EGRSHNVSVS
MGIAKLDKKA ADIYTVMSQA DAACRLAKDQ GRNGWHLYSA SDPKMNRLYT EMMASVDIVG
ALALNQFELY FQSIVPLNRE ESGLHLEILL RMVQANGTIV SPAIFLPAAE RYNLASKVDL
WVFDNLLKWG GCHLDIWQQL DLVSVNLSAT SLGDHEFMNW LEMRLMAEPE LVDKLCIEIT
ETAAVSQLDQ ATKLLDILRP LNCKLALDDF GAGFSSFAYL KRLNVDFVKV DGQFVVNICE
DSADQAIVKS ICQLGQDMGF DVVAEFVESQ DIGRKLQTLG VDYAQGYAIN KPIRLAELTS
GLSRPWLEKR ETFAAYPQL
|
|---|
| |