| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3743 |
|---|
| Symbol | |
|---|
| ID | 5369390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4447678 |
|---|
| End bp | 4450248 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640832000 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_001367930 |
|---|
| Protein GI | 153002249 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGGCCG CTGATGTCTT TTTCTTGAAC TCTCTACCTA TTCATAGCTT ATTAGCACCG
CTGCGTGCGG CTTTTTCTCG TCACGCTCAA GTGATCCTCG AGGCACCGAC AGGTGCGGGT
AAATCTACCG CGTTACCTTT GGCTATGTTG GATTGGCCAG AAATCAGCGG ACGCATTTTA
ATGCTCGAAC CTCGGCGTGT CGCTGCGCGC AGTGTGGCGC ACTATATTGC CCATTGTCGC
CAGCAAAAGG TGGGGCAAGA AGTGGGCTAT CGCGTGCGCG GTGAAGCTAA AGTCAGCGCT
AATACCCGCT TAGAGATTGT CACCGAAGGC ATACTCACGC GGATGATCCA GCAAGATCCC
GAGTTGACTG GGATTGAGAT GATCATCTTC GATGAGATCC ATGAACGCCA CCTCACTACC
GATTTAGGCC TCGCCTTAGC GCTCGAAGTG CAAGCTTCAC TGCGGGACGA TTTAAAGATA
TTAGCCATGT CGGCCACCTT ATCTGGCCTT GCCTTAGCTG AACTCATGCC AGAGGCTGTG
ACCTTACACA GTGAAGGCCG TAGTTTTCCC GTTGAGGTTG AATATCGCCC TGTGCCGACG
CAGCAGCATT GGATCGATCA TCTTGGCCGC TGCGTACTCG ATCTGGTCTC GGCCAGTAGT
GCCAACGTTG ATAAAACGGC TAGCAATAAC GCCGTGCTCG TTTTCTTACC GGGAAAAGGC
GAAATCTCAC GACTGCAGCA GTTTCTGCGT GAGCGCTTAG CCCAAGATGC CTTTCTGATT
TGCCCCCTTT ATGGCGAGCT TTCAGGCGCA GAGCAAGATA GCGCGATTGC GGCAACCACA
GATGGCAGGC GTAAAATCGT GCTAGCGACT AACGTGGCGG AATCGAGCTT AACCATTGAA
GGCATAGGTT TTGTCATCGA CAGCGGCTAT AAGCGTCAGG CCAGTTTTAA CCCTAAAACT
GGTGTCACTC GCTTAGGCTT AAAACGCATT AGCCAAGCTT CGGCAACTCA GCGCAGTGGC
CGCGCCGGAC GTTTATCTGC GGGTGTGTGC GTGCGTTTGT GGAGCCAAGA AGAACATGGC
CGCATGCTCA GGGCCGATGA ACCCGAGATC AGCCAAGCGG ATCTGGTGGC TATGGCCCAC
GATTGTGCTT ACTGGGGCGC AAAATCCTTC AGCGACTTGA TGTTGTTAAC GCCGCCACCG
AGTGTGAATG AGGCGCTGGC GTGGCAATTA CTGCAGCGCT TAGGCATGGT CGATGGTGAC
AATAAACTCA CTTCCCACGG TAAAGCGGCC TATGAGCTGG GGTGTCACCC CAGGCTTGCC
CATATGCTAT TGGGCGCGAA AAGCTTAAGT GTTAAAAGCT TAGGCGTAAA CAATGTTAAT
GAGCAAACTG GGCAACTGGG CAGTTTGGCC TGTTTGCTGT CGGGGATTGT AGAGGCGCGC
GGTTTGCCTA AAAAGGGCGC CGATATCATG AATTACCTGC ACTTTGCCTG TCAGGGGCAA
GCGGGACAGC AGGCAAAACA GTGGCAGAAA AAGCTCGGAT TAACTGCCGA TTTAGTGAGG
GTCGCAACCC ATGCTCACCA CAGTGATGTG GGATTATTGC TGGCGCTGGC GTATCCGGAC
CGTATCGCCA AAGCTCGCGG TGTTGAGGGC TATCAATTAG CCAATGGCAC TGGCGTCGTG
CTGGCGGCCG AAGATGCCTT GTCGCAAACG CCTTGGATGG TGGTGGCGGA TTTCCAAGAA
ACCGAAGGCC GAAACGCCGG ACGGATTTAC TTGGCGAGTC CGTTTCAGCC GAGCTTGTTC
GATAGCGAGC TAAAAGACTT GCTGGAAATC CACGAGATTT GTGGTTGGGA TGAGGGCAAA
GGCCGAGTCA TTGCCGAGCG CCAATACAAG GTCGGACAAA TTTTAGTGAA AACCGAGACG
ATTGCTAAGC CTGAGCGCAA GCAAATTGTC GCGGCCTTAC TGGGTTATAT TCGCCAGCAA
GGATTACAAA TTCTCAATTG GAACGCTAAC TTAGAGCAAT TTCAATACAG GCTCAAACTC
GCGACTGAGT TCGACGCAGG CAGCGACTGG CCCAAGGTCG ATGATGGGGC GTTATTAGCG
AGCCTAGAAA CTTGGCTGGC GCCTTACCTC GAAAATGTGA ATAATCTGCC GCAATTAGTT
AAGCTCGATT GCTTTGGTTT TGTGGCAAAC TGTTTGAGCT GGCAGCAGAA ACAGCGACTG
GACGAATTAT TGCCAACCTC TTGGCCGTTA GTCACAGGTA CCTCTGCGCC AATCGTATAC
GATGAGTCTG GGCGTGCGCT GCTACGGGTG CGACTGCAAG AAACCTTTGG CATGGCACAA
AGCCCTATGT TGGCGCAGAG CAAGCTAAAG GTGACGATGG AATTACTTTC TCCCGCTCAA
CGTCCATTGG CTTTGACGGC GGATTTAGCC AGTTTCTGGC AGGGACCTTA TGTGGAAGTG
AAAAAGGAAA TGCGCGGCCG ATATCCAAAA CATCTGTGGC CGGACGATCC TGTGAATACA
CTACCGACAA AATTTACGAA GAAGAAAACC TTGGGTTTAG CTCAGCCATA G
|
|---|
| Protein sequence | MLAADVFFLN SLPIHSLLAP LRAAFSRHAQ VILEAPTGAG KSTALPLAML DWPEISGRIL
MLEPRRVAAR SVAHYIAHCR QQKVGQEVGY RVRGEAKVSA NTRLEIVTEG ILTRMIQQDP
ELTGIEMIIF DEIHERHLTT DLGLALALEV QASLRDDLKI LAMSATLSGL ALAELMPEAV
TLHSEGRSFP VEVEYRPVPT QQHWIDHLGR CVLDLVSASS ANVDKTASNN AVLVFLPGKG
EISRLQQFLR ERLAQDAFLI CPLYGELSGA EQDSAIAATT DGRRKIVLAT NVAESSLTIE
GIGFVIDSGY KRQASFNPKT GVTRLGLKRI SQASATQRSG RAGRLSAGVC VRLWSQEEHG
RMLRADEPEI SQADLVAMAH DCAYWGAKSF SDLMLLTPPP SVNEALAWQL LQRLGMVDGD
NKLTSHGKAA YELGCHPRLA HMLLGAKSLS VKSLGVNNVN EQTGQLGSLA CLLSGIVEAR
GLPKKGADIM NYLHFACQGQ AGQQAKQWQK KLGLTADLVR VATHAHHSDV GLLLALAYPD
RIAKARGVEG YQLANGTGVV LAAEDALSQT PWMVVADFQE TEGRNAGRIY LASPFQPSLF
DSELKDLLEI HEICGWDEGK GRVIAERQYK VGQILVKTET IAKPERKQIV AALLGYIRQQ
GLQILNWNAN LEQFQYRLKL ATEFDAGSDW PKVDDGALLA SLETWLAPYL ENVNNLPQLV
KLDCFGFVAN CLSWQQKQRL DELLPTSWPL VTGTSAPIVY DESGRALLRV RLQETFGMAQ
SPMLAQSKLK VTMELLSPAQ RPLALTADLA SFWQGPYVEV KKEMRGRYPK HLWPDDPVNT
LPTKFTKKKT LGLAQP
|
|---|
| |