| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3691 |
|---|
| Symbol | |
|---|
| ID | 5372675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 4387041 |
|---|
| End bp | 4388090 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640831949 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001367879 |
|---|
| Protein GI | 153002198 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.484618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA CGCTCAAGCT CATGCAAGTT CATAGCGATT ATCAGGGCCA GCAAGTACTC
AAAGGCTTGA GCTTGGCTCT CGACCAAGGG GAAATCCTTG CGCTGTTAGG TCCCAGTGGT
TGCGGCAAGA CCACACTGTT GCGGGCGGTT GCGGGCTTAC AGGCGATTAG CCAAGGTGAA
ATCCAGATCA ATGGCCGCGT TGTGAGTGGC GACAGCCAGT TTGTGCCTAG CGAGCAGCGC
GGTATCGGCA TGATTTTCCA AGACTATGCG CTTTTTCCTC ATTTAACTGT GGCGGAGAAT
ATCCTTTTTG GCGTGGCTAA ATTGTCGGCC GCCGAGCGTC AGGCGCGGTT GGATGACATG
CTAACCTTAG TCAAACTCGA AGGCTTAGCT CAGCGTTATC CCCATGAGTT ATCTGGCGGT
CAGCAGCAGC GTGTCTCGAT TGCGCGTGCA CTTGCCTATG AGCCGCAGTT ATTACTGCTC
GATGAGCCTT TTTCTAATAT CGATGCCCAA GTGCGCTACG AGATGATGGC GGAAATTCGC
AGCATTTTGA AACAGCGTAA TGTTAGCGCG GTGTTTGTCA CCCACAGTAA GGATGAAGCT
TTTGTATTTG CTGATACTTT GGCGATTTTT AATCAAGGCA TTATAGTGCA GTATGGCAGC
GCTGAAGCCT TATACGCCGC GCCAAACAGC CGTTATGTGG CGGACTTTTT AGGTAGCGGT
AATTACTTAC CCGCCGCAGT GCTAGATGGA CACAGAGTTG CCACTCCTAT CGGTCATTTA
ACCAGCCTTA CGCCATTAGG GTTGCCGAGC GAGTTCAGCG GTACGGTATT TTTGCGCCCG
CAGCAATTGA CGCTCAGCGC CGATGAGCAA GGTGTGGGCA CGATCACAGA GCGGCGTTTC
TTAGGCGCTT TTTGTCATTA CTGGGTCAAA ATTGAAGCCG CTTCTCACGC TTATTATGTC
GAAGTGCGAA GCCAAATGAT GCAGCTCACT ATCGGCCAAA AAGTCGGGGT CACGACAGCG
CCGCACTCGC TGGTACTATT TGAATCTTAG
|
|---|
| Protein sequence | MTNTLKLMQV HSDYQGQQVL KGLSLALDQG EILALLGPSG CGKTTLLRAV AGLQAISQGE
IQINGRVVSG DSQFVPSEQR GIGMIFQDYA LFPHLTVAEN ILFGVAKLSA AERQARLDDM
LTLVKLEGLA QRYPHELSGG QQQRVSIARA LAYEPQLLLL DEPFSNIDAQ VRYEMMAEIR
SILKQRNVSA VFVTHSKDEA FVFADTLAIF NQGIIVQYGS AEALYAAPNS RYVADFLGSG
NYLPAAVLDG HRVATPIGHL TSLTPLGLPS EFSGTVFLRP QQLTLSADEQ GVGTITERRF
LGAFCHYWVK IEAASHAYYV EVRSQMMQLT IGQKVGVTTA PHSLVLFES
|
|---|
| |