| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3540 |
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| Symbol | |
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| ID | 5370815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 4211617 |
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| End bp | 4213611 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640831800 |
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| Product | transketolase |
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| Protein accession | YP_001367730 |
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| Protein GI | 153002049 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0018246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCCC GTAAAGTACT CGCAAACGCA ATCCGTGCGT TAAGTATGGA TGCAGTTCAA
AAAGCAAATT CAGGCCATCC CGGCGCCCCA ATGGGTATGG CAGATATTGC TGAAGTGCTG
TGGAATGATT TCCTTAAGCA CAACCCGACC AATCCTAAAT GGGTAGATAG AGACCGTTTC
GTCCTTTCTA ACGGTCACGG TTCAATGCTG ATCTACTCTT TACTTCACCT GACAGGTTAT
GAATTACCAA TCGAAGAACT GAAACAGTTC CGTCAATTGC ATTCAAAAAC CCCGGGTCAC
CCAGAATACG GTTACACCCC AGGTGTTGAA ACCACAACGG GTCCACTCGG CGCGGGCATC
AGCAATGCTG TCGGTATGGC GATTGCTGAA AAAACCTTAG CGGCACAGTT TAACCGTGAT
GGTCACGATA TCGTTGATCA CTACACTTAC TGCTTCGTCG GCGACGGCTG TTTGATGGAA
GGTATTTCCC ACGAAGCCTG TTCATTAGCC GGTACTTTAG GTCTTGGCAA ACTGGTCGCA
TTTTGGGATG ACAACGGTAT TTCTATCGAT GGCCATGTTG AAGGCTGGTT CACCGATGAT
ACGCCAAAGC GTTTTGAAGC TTACGGCTGG CATGTGATTG CCGGTGTTGA CGGTCACGAT
AGCGCGGCAA TCCGTGCTGC TATCGAAGCG GCGAAAGCGG TTACCGATAA ACCAACCATG
ATTTGCTGCA AAACCATTAT CGGTTTTGGT TCACCCAACA AATCTGGCAG CCACGATTGC
CACGGCGCGC CATTAGGCGA TGCGGAAATC GCCGCAGCCC GTGAATTCCT TGGCTGGTCA
TACGCCCCAT TTGAAATCCC TGCTGACGTT TATGCCGGTT GGGATGCCAA AGAAGCCGGT
GCTGCCCGCG AAGCAGCTTG GAATGAGAAG TTTGCTGCTT ACAGTGCAGC TCACCCAGAA
CTGGCTGCTG AATACGAGCG CCGCGTACTG AAAGGTGAAT TACCTGCTGA TTTCGAAGAA
AAAGCGCAGG CATTCGTGCA AGCATCACAG GACAAAGCTG AAGGTATTGC GAGCCGTAAA
GCCTCACAAA ATGCTATCGG TGCTTTCGGT GCTATGTTAC CTGAACTGTT AGGCGGCTCT
GCTGACTTAG CGGGTTCTAA CTTGACACTG TGGTCAGGTT CTAAAGGTAT TCAAGACGAT
CCTGCCGGTA ACTACATTTA CTACGGCGTG CGTGAATTCG GCATGAGCGG CATTATGAAC
GGTGCTTCGC TGCATGGTGG TTTCATCAAC TACGGCGCAA CTTTCATGAT GTTCATGGAA
TACGCACGTA ACGCAGTCCG CATGTCGGCG CTGATGGGCA TTCAAAACAT CTTCGTTTAT
ACCCATGACT CTATCGGTCA AGGTGAAGAT GGTCCAACGC ATCAGCCAGT TGAGCAACTA
GCTAACCTGC GTATGACGCC AAATATGGCC GTATGGCGCC CATGTGATGC GGCAGAAACA
GCGGTTTCTT GGAAAGCTGC GATTCAACGT CGCAATGCGC CAACGTCACT GATTTTCAGC
CGTCAAAATC TCAAAGCCCA AGCGCGTACC GCTGAGCAAT TAGCCAACGT GGCTAAAGGT
GCTTATGTAC TGCAAGACTG TACGGGTACA CCAGAACTGA TCCTGATCGC AACCGGTAGC
GAAGTACAAT TGGCGATGGA TTCTGCGGCT GCATTAACTG AGCAAGGTAA ACAAGTTCGC
GTAGTCTCTA TGCCATCGAC AACTGAGTTC GATAAGCAAG ATGCAGCGTA TAAAGAATCG
GTATTACCAC GTGCTGTGAC TAAACGTGTG GCTATCGAAG CGGCGCATAC CGATTTCTGG
TACAAGTACG TCGGTTTTGA AGGCACTGTT GTTGGCATGA CCACTTTTGG TGAGTCAGCG
CCGGGTAACG TGCTATTGAA TCACTTCGGT TTCACCGTTG AAAATGTGCT GAATGCTGCA
AAATCATTGG GCTAA
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| Protein sequence | MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPT NPKWVDRDRF
VLSNGHGSML IYSLLHLTGY ELPIEELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNRD GHDIVDHYTY CFVGDGCLME GISHEACSLA GTLGLGKLVA
FWDDNGISID GHVEGWFTDD TPKRFEAYGW HVIAGVDGHD SAAIRAAIEA AKAVTDKPTM
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWS YAPFEIPADV YAGWDAKEAG
AAREAAWNEK FAAYSAAHPE LAAEYERRVL KGELPADFEE KAQAFVQASQ DKAEGIASRK
ASQNAIGAFG AMLPELLGGS ADLAGSNLTL WSGSKGIQDD PAGNYIYYGV REFGMSGIMN
GASLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMA VWRPCDAAET AVSWKAAIQR RNAPTSLIFS RQNLKAQART AEQLANVAKG
AYVLQDCTGT PELILIATGS EVQLAMDSAA ALTEQGKQVR VVSMPSTTEF DKQDAAYKES
VLPRAVTKRV AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLNHFG FTVENVLNAA
KSLG
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