Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3292 |
Symbol | secD |
ID | 5371667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3922841 |
End bp | 3924655 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640831544 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001367482 |
Protein GI | 153001801 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0203863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAGAA AACCCAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT CTTATCGTCA CCATCATTGT GATGTTATTC AGTGCCTTGC CGACATTTTA TGGTGAGAAT GCCGCGGTGC AAGTGGGCGC TAAGGCTGGG TTAACACTTA CGCCCGTAGC CCTTAGAGAT AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAAAATGG TGAAACCTTA ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC GTCTATGGTG ACAGAGCCAA AAGAGTTGAC CTTATCCTTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC GATGTGGATG TTGACCCTGT GTATCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGT CAATTCATCC GTGAGCAGAA GATCCGTGGT GCCAGCGTCT ATTTGGACCA AACTAACCAG TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGT CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACTTGCA AGTTATGCGC AGTCGTATTG AAGAACTTGG CATAACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT ACAGCGAGTC TGGCTTTTTT CGAGGTGAAA GAGTCAGGCT CTGTGAATGC CATGGTGCTT AACGATAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CTGTGCTGGG TGGCGATCAC ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGTATGG CCGAGGTAAA CATTAACCTC GACCGTATCG GCGGGCAGAA AATGTCTGAG TTTTCCCGAA CCAATATTGG CAAACCTATG GCGACGTCTT ACAGCGAATA CAGTCGCGAT GAACTAGGTA AGGCTAAGCA AACTCAAGAG ATTATCAGCG TTGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT TACTGGTGCG GGCACCTATC AAGAAGCGCA ACAATTAGCC CTGTTACTGA GAGCGGGCTC TATGACGGCG CCAGTGACGA TTGTAGAAGA GCGCACTATT GGCCCGACGT TAGGTGCTGA AAACATTGAA AACGGTTTTG CTGCGCTTGG TCTAGGTATG GGGATTACCT TGTTGTTCAT GGCGCTTTGG TATCGTCGTC TCGGTTGGGT AGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTAC CCGGTATTGC TGGCCTAGTG TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG TTAAAAGAAG GTCGCAGTTT TGCGCTGGCA ATTGATACAG GGTTTGATAG TGCGTTTTCG ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCTG TCGTGCTGTA TTCCATCGGT AATGGCCCAA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT ACCGGTATCT TCGCTTCAAG AGCCTTGATT AACTTAGTTT ACGGACGTGA TGCTAGTCGT CATGTGAGGG TATAA
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Protein sequence | MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGEN AAVQVGAKAG LTLTPVALRD KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSF ASAAPSWLQN LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRIGGQKMSE FSRTNIGKPM ATSYSEYSRD ELGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDASR HVRV
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